Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J08
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9596| Best HMM Match : BAF (HMM E-Value=1.54143e-44)               118   2e-27
SB_46451| Best HMM Match : BAF (HMM E-Value=2.8e-17)                   81   5e-16
SB_58620| Best HMM Match : XH (HMM E-Value=1.6)                        28   5.0  
SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)                  28   5.0  
SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)                 27   8.7  
SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)                    27   8.7  
SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1)                  27   8.7  

>SB_9596| Best HMM Match : BAF (HMM E-Value=1.54143e-44)
          Length = 759

 Score =  118 bits (285), Expect = 2e-27
 Identities = 52/75 (69%), Positives = 65/75 (86%)
 Frame = +1

Query: 61  MSSTSQKHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELF 240
           MSSTSQKH+NFV+EPMG+K VTDLAG+G VLG +    GFDKAYVVLGQFL+LKK++E+F
Sbjct: 1   MSSTSQKHKNFVSEPMGEKLVTDLAGIGPVLGDKFTDKGFDKAYVVLGQFLLLKKDEEMF 60

Query: 241 QEWMKDTCSANSKQS 285
           ++W+KDT  AN KQ+
Sbjct: 61  EDWVKDTIGANKKQA 75


>SB_46451| Best HMM Match : BAF (HMM E-Value=2.8e-17)
          Length = 87

 Score = 81.0 bits (191), Expect = 5e-16
 Identities = 37/87 (42%), Positives = 53/87 (60%)
 Frame = +1

Query: 70  TSQKHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELFQEW 249
           T++KH NFV EPMG K V  + G+G    K LE  G   A+ +LG+FL+   +KE F ++
Sbjct: 2   TTKKHENFVGEPMGRKAVDKVPGIGPEHKKELERKGIHYAHQLLGEFLIRNMDKEKFGDY 61

Query: 250 MKDTCSANSKQSADCYQCLNEWCDEFL 330
           +     AN+K+  DCY+ +  WCDE L
Sbjct: 62  IMG-IGANNKEKNDCYEAMKGWCDEHL 87


>SB_58620| Best HMM Match : XH (HMM E-Value=1.6)
          Length = 376

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 150 NFTNTSQIRYRFITHRLSNEVSMFL 76
           NF + S IRY  + HR  N   M L
Sbjct: 84  NFNHLSSIRYEVLDHRFKNHTRMLL 108


>SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)
          Length = 918

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 207 VSGTQERKRIISRMDERYLQCKFQTIGRLLSVLE 308
           +  TQER+RI+     RY QC     G  +++ E
Sbjct: 662 IGETQERERILIPFSNRYYQCNTPDYGSAVTLRE 695


>SB_39597| Best HMM Match : 7tm_2 (HMM E-Value=2.9e-13)
          Length = 1052

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 414 SSPQSVIAFSNFRQYKYCDSINC 482
           +SP +++ + NFR YK  D +NC
Sbjct: 435 NSPPAIVYY-NFRNYKNIDCVNC 456


>SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)
          Length = 1234

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 463 YLYCLKLEKAITDCGEDYISKVTCYNCNKDFRKKQH*K 350
           Y YC  LEKA   C E    +  CY+  + F  + + K
Sbjct: 331 YCYCGNLEKAAEICNETG-DRAACYHLARQFENQDNVK 367


>SB_16002| Best HMM Match : Clathrin (HMM E-Value=1.1)
          Length = 977

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 463 YLYCLKLEKAITDCGEDYISKVTCYNCNKDFRKKQH*K 350
           Y YC  LEKA   C E    +  CY+  + F  + + K
Sbjct: 482 YCYCGNLEKAAEICNETG-DRAACYHLARQFENQDNVK 518


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,415,075
Number of Sequences: 59808
Number of extensions: 252844
Number of successful extensions: 673
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)