Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J08
(500 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR542140-1|CAG46937.1| 89|Homo sapiens BANF1 protein. 157 3e-38
BC107702-1|AAI07703.1| 89|Homo sapiens BANF1 protein protein. 157 3e-38
BC005942-1|AAH05942.1| 89|Homo sapiens barrier to autointegrat... 157 3e-38
AF070447-1|AAC23575.1| 89|Homo sapiens barrier-to-autointegrat... 157 3e-38
AF068235-1|AAD15901.1| 89|Homo sapiens barrier-to-autointegrat... 157 3e-38
AF044773-1|AAC08964.1| 138|Homo sapiens breakpoint cluster regi... 153 3e-37
AL160071-2|CAC15540.1| 90|Homo sapiens chromosome 20 open read... 72 1e-12
BC062735-1|AAH62735.1| 90|Homo sapiens chromosome 20 open read... 71 2e-12
BC054871-1|AAH54871.1| 90|Homo sapiens chromosome 20 open read... 71 2e-12
AF406780-1|AAN03620.1| 1626|Homo sapiens alpha 1 type XXII colla... 33 0.42
AL160071-1|CAM28312.1| 42|Homo sapiens chromosome 20 open read... 31 2.3
>CR542140-1|CAG46937.1| 89|Homo sapiens BANF1 protein.
Length = 89
Score = 157 bits (380), Expect = 3e-38
Identities = 67/88 (76%), Positives = 79/88 (89%)
Frame = +1
Query: 67 STSQKHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELFQE 246
+TSQKHR+FVAEPMG+KPV LAG+GEVLGK+LE GFDKAYVVLGQFLVLKK+++LF+E
Sbjct: 2 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFRE 61
Query: 247 WMKDTCSANSKQSADCYQCLNEWCDEFL 330
W+KDTC AN+KQS DC+ CL EWCD FL
Sbjct: 62 WLKDTCGANAKQSRDCFGCLREWCDAFL 89
>BC107702-1|AAI07703.1| 89|Homo sapiens BANF1 protein protein.
Length = 89
Score = 157 bits (380), Expect = 3e-38
Identities = 67/88 (76%), Positives = 79/88 (89%)
Frame = +1
Query: 67 STSQKHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELFQE 246
+TSQKHR+FVAEPMG+KPV LAG+GEVLGK+LE GFDKAYVVLGQFLVLKK+++LF+E
Sbjct: 2 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFRE 61
Query: 247 WMKDTCSANSKQSADCYQCLNEWCDEFL 330
W+KDTC AN+KQS DC+ CL EWCD FL
Sbjct: 62 WLKDTCGANAKQSRDCFGCLREWCDAFL 89
>BC005942-1|AAH05942.1| 89|Homo sapiens barrier to autointegration
factor 1 protein.
Length = 89
Score = 157 bits (380), Expect = 3e-38
Identities = 67/88 (76%), Positives = 79/88 (89%)
Frame = +1
Query: 67 STSQKHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELFQE 246
+TSQKHR+FVAEPMG+KPV LAG+GEVLGK+LE GFDKAYVVLGQFLVLKK+++LF+E
Sbjct: 2 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFRE 61
Query: 247 WMKDTCSANSKQSADCYQCLNEWCDEFL 330
W+KDTC AN+KQS DC+ CL EWCD FL
Sbjct: 62 WLKDTCGANAKQSRDCFGCLREWCDAFL 89
>AF070447-1|AAC23575.1| 89|Homo sapiens barrier-to-autointegration
factor protein.
Length = 89
Score = 157 bits (380), Expect = 3e-38
Identities = 67/88 (76%), Positives = 79/88 (89%)
Frame = +1
Query: 67 STSQKHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELFQE 246
+TSQKHR+FVAEPMG+KPV LAG+GEVLGK+LE GFDKAYVVLGQFLVLKK+++LF+E
Sbjct: 2 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFRE 61
Query: 247 WMKDTCSANSKQSADCYQCLNEWCDEFL 330
W+KDTC AN+KQS DC+ CL EWCD FL
Sbjct: 62 WLKDTCGANAKQSRDCFGCLREWCDAFL 89
>AF068235-1|AAD15901.1| 89|Homo sapiens barrier-to-autointegration
factor protein.
Length = 89
Score = 157 bits (380), Expect = 3e-38
Identities = 67/88 (76%), Positives = 79/88 (89%)
Frame = +1
Query: 67 STSQKHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELFQE 246
+TSQKHR+FVAEPMG+KPV LAG+GEVLGK+LE GFDKAYVVLGQFLVLKK+++LF+E
Sbjct: 2 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFRE 61
Query: 247 WMKDTCSANSKQSADCYQCLNEWCDEFL 330
W+KDTC AN+KQS DC+ CL EWCD FL
Sbjct: 62 WLKDTCGANAKQSRDCFGCLREWCDAFL 89
>AF044773-1|AAC08964.1| 138|Homo sapiens breakpoint cluster region
protein 1 protein.
Length = 138
Score = 153 bits (371), Expect = 3e-37
Identities = 65/85 (76%), Positives = 77/85 (90%)
Frame = +1
Query: 67 STSQKHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELFQE 246
+TSQKHR+FVAEPMG+KPV LAG+GEVLGK+LE GFDKAYVVLGQFLVLKK+++LF+E
Sbjct: 2 TTSQKHRDFVAEPMGEKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFRE 61
Query: 247 WMKDTCSANSKQSADCYQCLNEWCD 321
W+KDTC AN+KQS DC+ CL EWCD
Sbjct: 62 WLKDTCGANAKQSRDCFGCLREWCD 86
>AL160071-2|CAC15540.1| 90|Homo sapiens chromosome 20 open reading
frame 179 protein.
Length = 90
Score = 71.7 bits (168), Expect = 1e-12
Identities = 34/90 (37%), Positives = 51/90 (56%)
Frame = +1
Query: 61 MSSTSQKHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELF 240
M + S + R F++EP+G+K V + G+ L L T G +KAY++LGQFL++ K + F
Sbjct: 1 MDNMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLMHKNEAEF 60
Query: 241 QEWMKDTCSANSKQSADCYQCLNEWCDEFL 330
Q W+ A ++ CL EWC FL
Sbjct: 61 QRWLICCFGATECEAQQTSHCLKEWCACFL 90
>BC062735-1|AAH62735.1| 90|Homo sapiens chromosome 20 open reading
frame 179 protein.
Length = 90
Score = 71.3 bits (167), Expect = 2e-12
Identities = 34/90 (37%), Positives = 50/90 (55%)
Frame = +1
Query: 61 MSSTSQKHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELF 240
M S + R F++EP+G+K V + G+ L L T G +KAY++LGQFL++ K + F
Sbjct: 1 MDDMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLMHKNEAEF 60
Query: 241 QEWMKDTCSANSKQSADCYQCLNEWCDEFL 330
Q W+ A ++ CL EWC FL
Sbjct: 61 QRWLICCFGATECEAQQTSHCLKEWCACFL 90
>BC054871-1|AAH54871.1| 90|Homo sapiens chromosome 20 open reading
frame 179 protein.
Length = 90
Score = 71.3 bits (167), Expect = 2e-12
Identities = 34/90 (37%), Positives = 50/90 (55%)
Frame = +1
Query: 61 MSSTSQKHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELF 240
M S + R F++EP+G+K V + G+ L L T G +KAY++LGQFL++ K + F
Sbjct: 1 MDDMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINKAYILLGQFLLMHKNEAEF 60
Query: 241 QEWMKDTCSANSKQSADCYQCLNEWCDEFL 330
Q W+ A ++ CL EWC FL
Sbjct: 61 QRWLICCFGATECEAQQTSHCLKEWCACFL 90
>AF406780-1|AAN03620.1| 1626|Homo sapiens alpha 1 type XXII collagen
protein.
Length = 1626
Score = 33.5 bits (73), Expect = 0.42
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +1
Query: 79 KHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELFQEWMKD 258
KH N + + + DL V E+LGKR G +YV +G F V++ +++F + + D
Sbjct: 234 KHTNGGTKEITGFDLMDLFSVKEILGKREN--GAQSSYVRMGSFPVVQSTEDVFPQGLPD 291
>AL160071-1|CAM28312.1| 42|Homo sapiens chromosome 20 open reading
frame 179 protein.
Length = 42
Score = 31.1 bits (67), Expect = 2.3
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 61 MSSTSQKHRNFVAEPMGDKPVTDLAGVGEVLGKRLETAGFDK 186
M + S + R F++EP+G+K V + G+ L L T G +K
Sbjct: 1 MDNMSPRLRAFLSEPIGEKDVCWVDGISHELAINLVTKGINK 42
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,729,169
Number of Sequences: 237096
Number of extensions: 1223783
Number of successful extensions: 3371
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3370
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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