Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J08
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ...    30   0.76 
At5g32440.1 68418.m03825 expressed protein                             27   5.4  
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co...    27   5.4  
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    27   7.1  
At4g36890.1 68417.m05230 glycosyl transferase family 43 protein ...    27   9.4  
At4g13320.1 68417.m02082 expressed protein                             27   9.4  
At1g09500.2 68414.m01065 cinnamyl-alcohol dehydrogenase family /...    27   9.4  
At1g09500.1 68414.m01064 cinnamyl-alcohol dehydrogenase family /...    27   9.4  
At1g09480.1 68414.m01060 cinnamyl-alcohol dehydrogenase family /...    27   9.4  

>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}, RNA Binding Protein 47
           [Nicotiana plumbaginifolia] GI:9663769; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 481

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 202 PKPHRPYQNQPFLISFLKLHQHQPNPLQVYHP 107
           P P   Y   P+   +   H HQP+P+Q Y P
Sbjct: 393 PPPPYGYMPSPYQQQYPPNHHHQPSPMQHYAP 424


>At5g32440.1 68418.m03825 expressed protein
          Length = 264

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 445 LEKAITDCGEDYISKVTCYN 386
           LE+AI +CG+D  S + C N
Sbjct: 64  LERAIEECGDDLDSAIRCLN 83


>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
           contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
           PF04815: Sec23/Sec24 helical domain and PF04810:
           Sec23/Sec24 zinc finger
          Length = 1096

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 217 VPETGPKPHRPYQNQPFLISFLKLHQHQPNPLQVYHP 107
           +P +GP+P  P+   P   SF +  Q QP P  +  P
Sbjct: 52  MPGSGPRPSPPFGQSP--QSFPQQQQQQPRPSPMARP 86


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar
           to DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 390 TIAIKILGKNNTENFSIHL 334
           T+ IK+ GK+N+  FS HL
Sbjct: 666 TVGIKVKGKDNSATFSAHL 684


>At4g36890.1 68417.m05230 glycosyl transferase family 43 protein low
           similarity to Galactosylgalactosylxylosylprotein
           3-beta-glucuronosyltransferase 1, Homo sapiens
           [SP|Q9P2W7], Rattus norvegicus [SP|O35789]; contains
           Pfam domain Glycosyltransferase family 43 [PF03360]
          Length = 525

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 21/63 (33%), Positives = 29/63 (46%)
 Frame = +1

Query: 103 PMGDKPVTDLAGVGEVLGKRLETAGFDKAYVVLGQFLVLKKEKELFQEWMKDTCSANSKQ 282
           P   K    +  V  VL ++LE +GF     VL   L L +E E   EW+KD  S N  +
Sbjct: 341 PYAGKSAVYIDDVAAVLPQKLEWSGF-----VLNSRL-LWEEAENKPEWVKDFGSLNENE 394

Query: 283 SAD 291
             +
Sbjct: 395 GVE 397


>At4g13320.1 68417.m02082 expressed protein 
          Length = 216

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -2

Query: 421 GEDYISKVTCYNCNKDFRKKQH*KLFYTLNIKIHHTIHSSTDSNLPIVWN 272
           G+ Y  KVTCY  N +  + Q   LF    +      H+  D +  I+WN
Sbjct: 163 GDFYKDKVTCYVVNMEEEEDQ--LLFGGPWLYRVQATHNGRDDSCMIIWN 210


>At1g09500.2 68414.m01065 cinnamyl-alcohol dehydrogenase family /
           CAD family similar to cinnamyl alcohol dehydrogenase,
           Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
           unguiculata [gi:1854445]
          Length = 291

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 157 KRLETAGFDKAYVVLGQFLVLKKEKELFQEWMKDTCSANSKQ 282
           K LET   +  Y++ G  + +K  + + +E+  D C A+  +
Sbjct: 205 KALETPSANGRYIIDGPVVTIKDIENVLREFFPDLCIADRNE 246


>At1g09500.1 68414.m01064 cinnamyl-alcohol dehydrogenase family /
           CAD family similar to cinnamyl alcohol dehydrogenase,
           Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
           unguiculata [gi:1854445]
          Length = 325

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 157 KRLETAGFDKAYVVLGQFLVLKKEKELFQEWMKDTCSANSKQ 282
           K LET   +  Y++ G  + +K  + + +E+  D C A+  +
Sbjct: 239 KALETPSANGRYIIDGPVVTIKDIENVLREFFPDLCIADRNE 280


>At1g09480.1 68414.m01060 cinnamyl-alcohol dehydrogenase family /
           CAD family similar to cinnamyl alcohol dehydrogenase,
           Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
           unguiculata [gi:1854445]
          Length = 369

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = +1

Query: 157 KRLETAGFDKAYVVLGQFLVLKKEKELFQEWMKDTCSANSKQSADCYQCLNEWCDE 324
           K LET   +  Y++ G  + +    ++ +E + D C A++ + +   + L + C E
Sbjct: 285 KALETPSANGRYIIDGPIMSVSDIIDILRELLPDLCIADTNEESVMNEMLCKVCVE 340


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,498,298
Number of Sequences: 28952
Number of extensions: 181980
Number of successful extensions: 522
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)