Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J07
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    31   0.068
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   2.5  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   4.5  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   5.9  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   7.8  

>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 31.5 bits (68), Expect = 0.068
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 141 QIEHTLSFAKDFFESCFSSLPIDNL 215
           +IEHT+++A+D FE  F   PIDN+
Sbjct: 601 RIEHTIAWARDLFEGLFKQ-PIDNV 624


>SPAC6B12.11 |drc1|sld1|DNA replication protein
          Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 55 KWINQYVHNENCK 17
          KW ++YVH  NCK
Sbjct: 19 KWEHEYVHTNNCK 31


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 304 KSKN*NSLK*ETSAISS*KDNSLKGTKDFGKLSIGSDEKQDS 179
           K  N  +LK + S+    KD+   GT DF KL  G+D  +++
Sbjct: 778 KDSNLQTLKEDASSTKQAKDS---GTNDFDKLISGNDVSKNN 816


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 338  VIDFHFVAGVR*TNLGAAYETCFISHNRTSKRECFQLIIA 457
            ++D  F   +R + LG     C I     + R CF  IIA
Sbjct: 1307 ILDSCFSKNLRYSMLGIEILKCIIHQGLVNPRMCFSTIIA 1346


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 427 TCSIVADEAGFISRSEIRLPYTRHEMKINNN 335
           TCSI+ +    +S  E  + Y +  +++N N
Sbjct: 340 TCSIIGNYYSLLSEHEKAVTYFKRALQLNRN 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,064
Number of Sequences: 5004
Number of extensions: 37733
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)