Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J07
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446...    28   4.4  
07_03_0698 - 20765305-20768526                                         27   7.7  

>03_03_0186 +
           15243150-15243563,15243685-15243777,15244604-15244666,
           15245028-15245114,15245197-15245349,15245422-15245579,
           15246458-15246692,15246782-15246892,15246942-15246968,
           15247269-15248327,15248432-15248692,15249011-15249196,
           15249642-15250793,15250886-15251236,15251343-15251738
          Length = 1581

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 60  YNIKNFNVMSSFDNAVFNTTLCEVLFLQIEHTLSFAKDFFESCFS 194
           Y +   N   S ++ +   T+ +++ L++ HTLSF +   E C +
Sbjct: 181 YLLFMINAFQSLEDELVRETILQLVSLKLWHTLSFGRLQMELCLN 225


>07_03_0698 - 20765305-20768526
          Length = 1073

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 436 LSLTCSIVADEAGFISRSEIRLPYTRHEMKINNNVKRNI 320
           ++L   ++ DEA  + R    L +   EM+  NNV R+I
Sbjct: 9   VNLVLGLIQDEARLLGRVREDLQFIMQEMESMNNVLRHI 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,923,754
Number of Sequences: 37544
Number of extensions: 189940
Number of successful extensions: 383
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)