Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J07
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.49 
SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.65 
SB_8251| Best HMM Match : P53 (HMM E-Value=0.059)                      30   1.1  
SB_11531| Best HMM Match : Fapy_DNA_glyco (HMM E-Value=2.7e-05)        29   1.5  
SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)                  28   3.4  
SB_54252| Best HMM Match : F5_F8_type_C (HMM E-Value=6.1e-15)          27   7.9  
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 18/45 (40%), Positives = 28/45 (62%)
 Frame = -1

Query: 304 KSKN*NSLK*ETSAISS*KDNSLKGTKDFGKLSIGSDEKQDSKKS 170
           KSK+ ++ + E SA  +  D++ K   D   +SI SDEK++SK S
Sbjct: 253 KSKDESTEEKEESATKAEVDDNKKAKADKASISIISDEKEESKDS 297


>SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 23/77 (29%), Positives = 43/77 (55%)
 Frame = -1

Query: 382 EIRLPYTRHEMKINNNVKRNIHVKVFKSKN*NSLK*ETSAISS*KDNSLKGTKDFGKLSI 203
           +IRLP +++E K  N   R+ HV+   SKN  +++ ++SA    K+++L       ++  
Sbjct: 182 QIRLPSSKNEKKSTNKQDRSSHVR--SSKNPITIQQQSSA----KESALVR----NQVKF 231

Query: 202 GSDEKQDSKKSFANDKV 152
           G  + + + +SF ND V
Sbjct: 232 GKTKDEQNPESFENDYV 248


>SB_8251| Best HMM Match : P53 (HMM E-Value=0.059)
          Length = 329

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 96  DNAVFNTTLCEVLFLQIEHTLSFAKDFFESCFSSLPIDNLPKSFVPLSELSFYEDIAEVS 275
           DN V+N  +C  +   I   ++FA +FF +  S   I ++P     + E     D    S
Sbjct: 177 DNTVYNLKVCGYVNYLILRKIAFALEFFANMRSK--ISDIPSEACDMPEFFELSDQPHFS 234

Query: 276 YFN 284
           ++N
Sbjct: 235 FYN 237


>SB_11531| Best HMM Match : Fapy_DNA_glyco (HMM E-Value=2.7e-05)
          Length = 245

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 78  NVMSSFDNAVFNTTLCEVLFLQ 143
           NV+++ D++VFN  LCEVL  Q
Sbjct: 155 NVLNNLDSSVFNKPLCEVLHNQ 176


>SB_57150| Best HMM Match : ThiF (HMM E-Value=2.8e-35)
          Length = 1026

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 144 IEHTLSFAKDFFESCFSSLPIDNL 215
           IEHTL +A+D FE  F ++P +N+
Sbjct: 498 IEHTLQWARDAFEGLF-TIPAENV 520


>SB_54252| Best HMM Match : F5_F8_type_C (HMM E-Value=6.1e-15)
          Length = 181

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 472 GVCSLGNYKLETLSLTCSIVADEAGFISRSEIRLPYT 362
           G C     K+E+ ++  + + D+AG I   + RL YT
Sbjct: 7   GTCDTSPLKMESGAIANNKITDKAGVIVGDQARLGYT 43


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = -1

Query: 361 RHEMKINNNVKRNIHVKVFKSKN*NSLK*ETSAISS*KDNSLKGTKDFGKLSIGSDEKQD 182
           ++  K +   K + H     SKN N  K +  A S+ KD SLK  K      + +  K+D
Sbjct: 259 QNNAKSDGKGKEDTHTS-HPSKNNNIKKLKNGAKSTAKDESLKRLKPKKDQVLEAKRKED 317

Query: 181 SKK 173
           S+K
Sbjct: 318 SEK 320


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,445,783
Number of Sequences: 59808
Number of extensions: 250545
Number of successful extensions: 527
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)