Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J07
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022975-6|AAB70671.2|  293|Caenorhabditis elegans Serpentine re...    30   0.98 
AF022975-5|AAB70672.1|  292|Caenorhabditis elegans Serpentine re...    29   1.3  
Z81564-4|CAB04574.1|  432|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z81098-2|CAB03182.1|  961|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical ...    28   3.9  
U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical pr...    27   5.2  
Z81531-2|CAB04316.1|  422|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical p...    27   9.1  

>AF022975-6|AAB70671.2|  293|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 12 protein.
          Length = 293

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +2

Query: 311 FHVDISFYIVIDFHFVAGVR*TNLGAAYETCFISHNRTSKRECFQLI 451
           F+ DI  Y+  DF        T LG A   CF  +  T K   F LI
Sbjct: 134 FNEDIVLYVFCDFQLNIPKNCTALGCAINECFYQYWTTHKSIVFALI 180


>AF022975-5|AAB70672.1|  292|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 13 protein.
          Length = 292

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +2

Query: 320 DISFYIVIDFHFVAGVR*TNLGAAYETCFISHNRTSKRECFQLI 451
           DI  Y+  DF        T LG A  +CF  +  T K   F LI
Sbjct: 137 DIVLYVFCDFQLTIPENCTALGCAINSCFYRYWTTHKSIVFALI 180


>Z81564-4|CAB04574.1|  432|Caenorhabditis elegans Hypothetical
           protein K05C4.4 protein.
          Length = 432

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
 Frame = +3

Query: 3   LPITNLQFSL*TYWLIHLFYNIKNFNVMSSFDNAVFNTTL---CEVLFLQIEHTLSFAKD 173
           L ++   F+L  +  I+L   IK F       N++ N      C VL L   +   FA+ 
Sbjct: 309 LDVSGFCFNLEIFRSINL-EGIKKFTARDHCLNSLRNFPYLPNCTVLGLSNNNIKEFARS 367

Query: 174 FFESCFSSLP----IDNLPKSFVPLSELSFYED 260
           F    F  +P    ID+ P+   PL+    +ED
Sbjct: 368 FATYFFKRIPTLKRIDDKPEKMAPLALEEHFED 400


>Z81098-2|CAB03182.1|  961|Caenorhabditis elegans Hypothetical
           protein K07A12.2 protein.
          Length = 961

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -1

Query: 379 IRLPYTRHEMKINNNVKRNIHVKVFKS-KN*NSLK*ETSAISS*KDNSLKGTKDFGKLSI 203
           + LP+ R E+++ NN  R IH   F +      L  + + IS+   N L+G K+   L +
Sbjct: 220 MNLPFLR-ELRVQNNTLRRIHPMAFMNVPQLQYLYLQDNIISTLDGNRLQGFKNLEVLDV 278

Query: 202 GSD 194
            ++
Sbjct: 279 SNN 281


>AF078792-3|AAC26945.2|  635|Caenorhabditis elegans Hypothetical
           protein Y40D12A.1a protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 90  SFDNAVFNTTLCEVLFLQIEHTLSFAKDFFESCFSSLPIDNLPKSFVPL 236
           +F N+  N TL     + IEH L+   + F++   S  + NLP+   PL
Sbjct: 495 NFSNSNRNYTLKLDTNVTIEHILAAISEGFDNYMESFTLTNLPQITPPL 543


>U39848-2|AAT81211.1|  279|Caenorhabditis elegans Hypothetical
           protein B0286.6 protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 96  DNAVFNTTLCEVLFLQIEHTLSFAKDFFESCFSSLP 203
           D  +   +  ++   ++E  + F+KD F +C  S P
Sbjct: 112 DGCIDRESFNDIAVFELEEPIEFSKDIFPACLPSAP 147


>Z81531-2|CAB04316.1|  422|Caenorhabditis elegans Hypothetical
           protein F36D3.2 protein.
          Length = 422

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -1

Query: 235 KGTKDFGKLSIGSDEKQDSKKSFANDKVC 149
           K T+  GK  IGSDE +D    F   K C
Sbjct: 52  KCTRKSGKCKIGSDETKDVMCKFCRFKKC 80


>Z77652-11|CAI70405.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.13 protein.
          Length = 310

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +3

Query: 66  IKNFNVMSSFDNAVFNTTLCEVLFLQIEHTLSFAKDFFESCFSSLP 203
           +K      S D  +   ++   +FL I   +    DFF   F +LP
Sbjct: 203 MKKLRTRQSHDRTLLIQSIAATIFLLIYEIMDTLTDFFSDYFDALP 248


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,395,598
Number of Sequences: 27780
Number of extensions: 202493
Number of successful extensions: 474
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)