Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J07
         (475 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ...    29   1.2  
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ...    29   1.2  
At3g04880.1 68416.m00530 DNA-damage-repair/toleration protein (D...    28   2.8  
At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR ...    27   6.5  

>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
           contains multiple zinc finger domains: PF00096: Zinc
           finger, C2H2 type
          Length = 412

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = -1

Query: 361 RHEMKINNNVKRNIHVKVFKSKN*NSLK*ETSAISS*KDNSLKGTKDFGKLSIGSDEKQD 182
           + E  +  NV R  HVK + S N N  K  T      KDN+ KG  D  K   G  EK++
Sbjct: 131 KSEFSVQGNVGR--HVKKYHS-NDNRDKDNTGLGDGDKDNTCKGDDDKEKSGSGGCEKEN 187


>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
           contains multiple zinc finger domains: PF00096: Zinc
           finger, C2H2 type
          Length = 324

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = -1

Query: 361 RHEMKINNNVKRNIHVKVFKSKN*NSLK*ETSAISS*KDNSLKGTKDFGKLSIGSDEKQD 182
           + E  +  NV R  HVK + S N N  K  T      KDN+ KG  D  K   G  EK++
Sbjct: 43  KSEFSVQGNVGR--HVKKYHS-NDNRDKDNTGLGDGDKDNTCKGDDDKEKSGSGGCEKEN 99


>At3g04880.1 68416.m00530 DNA-damage-repair/toleration protein
           (DRT102) identical to DNA-damage-toleration protein
           DRT102 SP:Q05212 from  [Arabidopsis thaliana]; contains
           Pfam profile: PF02502 ribose/galactose isomerase
          Length = 310

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 271 TSAISS*KDNSLKGTKDFGKLSIGSDEKQDSKKSFANDKVCSI*RNR 131
           +S ISS  DNSL      GK + G    +   ++ A+  +C + +NR
Sbjct: 149 SSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDETTASCVICCLAKNR 195


>At1g33560.1 68414.m04153 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 787

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 48  IHL-FYNIKNFNVMSSFDNAVFNTTLCEVLFLQIEHTLSFAKDFFESCFSSLPIDNLPK 221
           IHL F  +KN  V +SFD +    +L ++     +  L     F  +  +SL I N P+
Sbjct: 605 IHLIFCKVKNSFVQTSFDISKIFPSLSDLTIDHCDDLLELKSIFGITSLNSLSITNCPR 663


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,462,995
Number of Sequences: 28952
Number of extensions: 176642
Number of successful extensions: 392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)