Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J06
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 105 7e-24
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 30 0.24
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 29 0.41
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.72
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 29 0.72
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 28 1.3
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 27 2.9
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 27 2.9
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 26 5.1
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 6.7
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 25 6.7
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 25 6.7
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 25 8.9
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 8.9
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 105 bits (251), Expect = 7e-24
Identities = 63/168 (37%), Positives = 98/168 (58%), Gaps = 8/168 (4%)
Frame = +2
Query: 2 ERQRDRNLSRAAPDKRSKLV-KDRERDISEQIALGMPAKSAQGAEAMFDQRLFNNTKGMD 178
+ ++D LSR +KR+KL KDR RD++E++ALG+ +K + ++ M D RLFN G+
Sbjct: 401 QAEKDLRLSRMGAEKRAKLAEKDRPRDVAERVALGL-SKPSMSSDTMIDSRLFNQASGLG 459
Query: 179 SGYGDDEAYNVYDKPWRNQDNIGTHIYRP--TRNADXDNYSDIDAIANTRRF----VADK 340
SG+ D+++YNVYDKPWR + + +YRP T + D ++++ I + R+ A K
Sbjct: 460 SGFQDEDSYNVYDKPWRAAPS--STLYRPGATLSRQVDASAELERITSESRYDVLGNAHK 517
Query: 341 EFAGTSS-TNARSGPVQFEKDAPNREEPSRSGQADADFDPFGLDRFLS 481
+F G+ +R+GPV FEKD DPFG+D FL+
Sbjct: 518 KFKGSDEVVESRAGPVTFEKDIA---------------DPFGVDTFLN 550
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 30.3 bits (65), Expect = 0.24
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Frame = -2
Query: 448 VRVRLTAPGRFFT----IRRVLLKLDRSR-TSVGTTRPSEFFVSDKPSSISNGVDITVVI 284
V V APG+ F+ I R ++ R TS G S +DKP + V
Sbjct: 433 VAVLQRAPGQVFSGTLGILRPSSAANKERQTSSGNQGSSNNSGNDKPKIVWFKPSDKRVP 492
Query: 283 LIGVP--RRPVD-VGSDVVLITPRFVIHVVRFVITVTAVHPFGVI 158
LI +P + P D +G+D F+ + R+ VT++HPFG++
Sbjct: 493 LIAIPTEQAPTDFLGNDQAYAQRLFLASIKRW--PVTSLHPFGML 535
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 29.5 bits (63), Expect = 0.41
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +2
Query: 347 AGTSSTNARSGPVQFEKDAPNREEPSRSGQADADFDPFGLDRFLSEAKRADKSARKREHH 526
A S ++ S F K E + S + + +P G+ R +S AKR + HH
Sbjct: 138 ASKPSLSSNSSDSSFSKSGS--ESNALSSRGSFELEPHGIHRHVSRAKRLLSKFYSKFHH 195
Query: 527 DRHD 538
+ D
Sbjct: 196 KKED 199
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 0.72
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = +2
Query: 482 EAKRADKSARKREHHDRHDQHGKKRRD*PXY 574
E KRA A R+ HDRH QHG P Y
Sbjct: 318 EVKRATPKASLRDSHDRH-QHGYHGNANPYY 347
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 28.7 bits (61), Expect = 0.72
Identities = 13/51 (25%), Positives = 20/51 (39%)
Frame = +2
Query: 206 NVYDKPWRNQDNIGTHIYRPTRNADXDNYSDIDAIANTRRFVADKEFAGTS 358
N+Y K W + D +G + PTR + + I F A G +
Sbjct: 100 NLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNN 150
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.9 bits (59), Expect = 1.3
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +2
Query: 158 NNTKGMDSGYGDDEAY-NVYDKPWRNQD-NIGTHIYRPTRNADXDNYSDIDAIANTRRFV 331
+N+ D+ DD+AY NV + D +I TH P N + S DA++ + V
Sbjct: 192 SNSNSSDTST-DDQAYLNVSVSENEHADRSIKTHSSAPPLNQQKSSTSVNDAVSKAIQLV 250
Query: 332 ADKEFAGTSSTNARS 376
G+ STN S
Sbjct: 251 KSTSDLGSLSTNTSS 265
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = -3
Query: 519 SRLRADLSARFASLRNRSRPNGSKSASA*PLREGSSRFGASFSNWTGP 376
+R+R F S N+ RP ++ P R+ S+ F+ GP
Sbjct: 49 TRMRQGFEKSFPSSPNKKRPRTNEGDRFIPSRDASTELWTGFTKVEGP 96
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 386 QFEKDAPNREEPSRSGQADADFDPFGLDRFLSEAKRADKSARKREHHDRHD 538
Q + D P + SRS +D + D R+D KREH+D D
Sbjct: 307 QEDYDKPKNTQVSRSSNHHRRYDSYHPD------SRSDSYRSKREHYDNRD 351
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = -2
Query: 382 RSRTSVGTTRPSEFFVSDKPSSISNGVDITVVILIGVPRRPVDVGSDVV 236
+S +GT S+F PS +S ++I + + + V + D++
Sbjct: 341 KSAFGIGTNLTSDFQKVSNPSEVSKPMNIVIKLFSAEGTKAVKISDDIM 389
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 386 QFEKDAPNREEPSRSGQADADFDPFGLDRFLSEAKRADK 502
+ + +APNR + R+G D D D F E ++ +K
Sbjct: 152 EVDDEAPNRTQGHRAGVIDEFADFIEQDEFEDEERQEEK 190
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 47 RSKLVKDRE-RDISEQIALGMPAKSAQGAEAMFDQRLFNNTKGMDSGYGDDEAYNVY 214
+ V +R+ R + +IAL + + AQ + F +RL +N + + DD +Y
Sbjct: 66 KQNFVLERDVRYLDSKIALLIQNRMAQEEQHEFAKRLNDNYNAVKGSFPDDRKLQLY 122
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 501 LSARFASLRNRSRPNGSKSASA*PLREGSSRFGASFSNWT 382
+SA +S+ S + SKS+S+ R GSS +S S T
Sbjct: 515 MSASLSSVHTSSATSSSKSSSSSSSRSGSSSSSSSRSGST 554
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.0 bits (52), Expect = 8.9
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2
Query: 521 HHDRHDQHGKKRR 559
HHD+HD+H K +
Sbjct: 244 HHDKHDKHDKHEK 256
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 417 SSRFGASFSNWTGPERALVLLVPANSLSATNR 322
+S FG F ++ P R+ +P SLS+T R
Sbjct: 433 TSEFGELFVDFRRPARSYPAHIPLMSLSSTKR 464
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,737
Number of Sequences: 5004
Number of extensions: 44655
Number of successful extensions: 178
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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