Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J06
(623 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44017| Best HMM Match : SKIP_SNW (HMM E-Value=0) 185 3e-47
SB_32330| Best HMM Match : DUF1104 (HMM E-Value=8.2) 32 0.33
SB_48191| Best HMM Match : ROKNT (HMM E-Value=3.6) 31 0.76
SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2) 31 0.76
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9) 30 1.8
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_11988| Best HMM Match : Ank (HMM E-Value=5.1e-32) 29 3.1
SB_6819| Best HMM Match : zf-CCHC (HMM E-Value=0.46) 29 3.1
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_11163| Best HMM Match : DUF1104 (HMM E-Value=1.7) 29 4.1
SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11) 29 4.1
SB_1242| Best HMM Match : DUF590 (HMM E-Value=4.2e-05) 29 4.1
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) 28 5.4
SB_42826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_24036| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_24035| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0) 28 5.4
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 28 7.1
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10) 28 7.1
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013) 28 7.1
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_26083| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_44017| Best HMM Match : SKIP_SNW (HMM E-Value=0)
Length = 754
Score = 185 bits (450), Expect = 3e-47
Identities = 98/188 (52%), Positives = 126/188 (67%), Gaps = 2/188 (1%)
Frame = +2
Query: 2 ERQRDRNLSRAAPDKRSKLVKDRERDISEQIALGMPAKSAQGAEAMFDQRLFNNTKGMDS 181
ER+RDR +S+AAPDKRSKL +D+ERDISEQIALG A+ A EAMFDQRL+N +KGMDS
Sbjct: 584 ERERDRRISKAAPDKRSKLARDKERDISEQIALG-GARGAASEEAMFDQRLYNRSKGMDS 642
Query: 182 GYGDDEAYNVYDKPWRNQDNIGTHIYRPTRN-ADXDNY-SDIDAIANTRRFVADKEFAGT 355
G+GDD+AYNVYDK WR + + IYRP++ D D Y D++ + T RF DKEFAGT
Sbjct: 643 GFGDDDAYNVYDKAWRQGASTASSIYRPSKGIVDKDIYGDDLEKLVKTDRFQPDKEFAGT 702
Query: 356 SSTNARSGPVQFEKDAPNREEPSRSGQADADFDPFGLDRFLSEAKRADKSARKREHHDRH 535
R GPVQFEK+ EE DPFGLD+FL++AK+ ++ + D H
Sbjct: 703 DHGQRRDGPVQFEKE----EE-----------DPFGLDKFLTQAKKGKRTIDEPRSRD-H 746
Query: 536 DQHGKKRR 559
+ K++R
Sbjct: 747 ESRSKRKR 754
>SB_32330| Best HMM Match : DUF1104 (HMM E-Value=8.2)
Length = 169
Score = 32.3 bits (70), Expect = 0.33
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 546 PCWSCLSWCSRLRA 505
PCW CL WCSR+ A
Sbjct: 152 PCWVCLGWCSRVDA 165
>SB_48191| Best HMM Match : ROKNT (HMM E-Value=3.6)
Length = 259
Score = 31.1 bits (67), Expect = 0.76
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = +2
Query: 176 DSGYGDDEAYNVYDKPWRNQDNIGTHIYRPTRNADXDNYSDIDAIANTRRFVADKEFAGT 355
D G D+ + ++ + DN + + N + + + D+D++++T KE A
Sbjct: 159 DQAAGGDQEASEHEMEDKTSDNTRAVLEEGSLNVEDEVFLDLDSLSST----MPKEKAAN 214
Query: 356 SSTNARSGPVQFEKDA 403
S+T AR +KDA
Sbjct: 215 STTTARKTRASKKKDA 230
>SB_42301| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
Length = 600
Score = 31.1 bits (67), Expect = 0.76
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 93 ICSDISLSRSFTNFDLLSGAALDRFLSR 10
+CSD+ LSR N D+LS D LSR
Sbjct: 313 VCSDVGLSRVTINSDILSPVCSDEVLSR 340
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 93 ICSDISLSRSFTNFDLLSGAALDRFLSR 10
+CSD+ LSR N D+LS D LSR
Sbjct: 408 VCSDVGLSRVTINSDILSPLCSDEVLSR 435
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 93 ICSDISLSRSFTNFDLLSGAALDRFLSR 10
+CSD+ LSR N D+LS D LSR
Sbjct: 370 VCSDVGLSRVTINSDILSPVCSDEGLSR 397
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -3
Query: 102 PRAICSDISLSRSFTNFDLLSGAALDRFLSR 10
P +CSD LSR N D LS D LSR
Sbjct: 253 PSPVCSDEGLSRVSINSDTLSPVCSDEGLSR 283
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = -3
Query: 93 ICSDISLSRSFTNFDLLSGAALDRFLSR 10
+CSD LSR N D+LS D LSR
Sbjct: 332 VCSDEVLSRVTINSDILSSVCSDEGLSR 359
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 30.7 bits (66), Expect = 1.0
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = -1
Query: 254 CGFRCCPDYATVCHTRCTLRHHRNRCPSLWC 162
C +CC ++ C C+ ++ ++ CPS+ C
Sbjct: 1565 CPIKCCTKLSSSCPADCSPQNCKSSCPSICC 1595
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 254 CGFRCCPDYATVCHTRCTLRHHRNRCPSLWC 162
C +CCP A C C+ + CPS C
Sbjct: 1505 CPIKCCPATAIKCPVGCSEHSCKPECPSKCC 1535
Score = 29.1 bits (62), Expect = 3.1
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = -1
Query: 254 CGFRCCPDYATVCHTRCTLRHHRNRCPSLWC 162
C CC +++ C C+ + + CPS C
Sbjct: 1299 CPVHCCSEHSNACPQECSTDNCKPSCPSECC 1329
>SB_55739| Best HMM Match : Protamine_P2 (HMM E-Value=1.9)
Length = 678
Score = 29.9 bits (64), Expect = 1.8
Identities = 28/97 (28%), Positives = 41/97 (42%)
Frame = +2
Query: 254 IYRPTRNADXDNYSDIDAIANTRRFVADKEFAGTSSTNARSGPVQFEKDAPNREEPSRSG 433
+Y P+ +D D +D + R+ A FA SS R G + D E P G
Sbjct: 385 MYPPSAGSDSDY---LDEVQLQRKLTAT--FAAQSS---RDGQTLLKAD-DMAERPHNPG 435
Query: 434 QADADFDPFGLDRFLSEAKRADKSARKREHHDRHDQH 544
AD + L ++ +R + +RKR RH QH
Sbjct: 436 YI-ADSEEDQLKMLQAQLRRMHRQSRKRSGSGRHRQH 471
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -1
Query: 485 PRSGTDPDRTGRSPRPPDRSGKVLHDSARPSQTGQVQNERWY 360
PRS PD R+ R PD +L +A P + G +N+RWY
Sbjct: 556 PRSTRSPDTRPRTTRLPDFLA-ILMSTALP-RYGCYENDRWY 595
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -1
Query: 485 PRSGTDPDRTGRSPRPPDRSGKVLHDSARPSQTGQVQNERWY 360
PRS PD R+ R PD +L +A P + G +N+RWY
Sbjct: 921 PRSTRSPDTRPRTTRLPDFLA-ILMSTALP-RYGCYENDRWY 960
>SB_11988| Best HMM Match : Ank (HMM E-Value=5.1e-32)
Length = 639
Score = 29.1 bits (62), Expect = 3.1
Identities = 25/96 (26%), Positives = 43/96 (44%)
Frame = +2
Query: 131 EAMFDQRLFNNTKGMDSGYGDDEAYNVYDKPWRNQDNIGTHIYRPTRNADXDNYSDIDAI 310
EA D+R NN + SG G D++ + +NQD + ++ D ++ D A
Sbjct: 321 EADHDKRTGNNGNKICSGRGTDQSDTTNNNAQQNQDKMLKFDQSLSKTTDGRSHKDEAAD 380
Query: 311 ANTRRFVADKEFAGTSSTNARSGPVQFEKDAPNREE 418
++K+ T ++ S ++ K APN EE
Sbjct: 381 HVVLLSNSEKDNYDTPASRCPS-CIKKMKKAPNGEE 415
>SB_6819| Best HMM Match : zf-CCHC (HMM E-Value=0.46)
Length = 335
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = -1
Query: 278 RRSSSAGRCGFRC----CPDYATVCHTRCTLRHHRNRCPS 171
R +S CG + CP Y +C RC +HH RC S
Sbjct: 282 RNQNSCRFCGLQHDRGNCPAYNAICR-RCKAKHHYARCCS 320
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Frame = +2
Query: 353 TSSTNARSGPVQFEKDAPNREEPSRSGQADADFDPFGLDRFLSEAKRADKSARKREH-HD 529
T +T++ + P + + + D D D + R R+H HD
Sbjct: 5264 TDNTSSSTAPTRSHRHGSRGRHRNEEDIGDDDADDTSSYTIPMRSHRHSSRGHHRKHRHD 5323
Query: 530 RHDQHGKKR 556
RH+ H K++
Sbjct: 5324 RHNPHSKRK 5332
>SB_11163| Best HMM Match : DUF1104 (HMM E-Value=1.7)
Length = 282
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +2
Query: 425 RSGQADADFDPFGLDRFLSEAKRAD 499
R GQ D D P D FLSE KR D
Sbjct: 42 RKGQTDPDEIPVVDDEFLSEGKRVD 66
>SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)
Length = 1123
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = +2
Query: 425 RSGQADADFDPFGLDRFLSEAKRAD 499
R GQ D D P D FLSE KR D
Sbjct: 42 RKGQTDPDEIPVVDDEFLSEGKRVD 66
>SB_1242| Best HMM Match : DUF590 (HMM E-Value=4.2e-05)
Length = 195
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -1
Query: 485 PRSGTDPDRTGRSPRPPDRSGKVLHDSARPSQTGQVQNERWY 360
PRS PD R+ R PD L +A P + G +N+RWY
Sbjct: 52 PRSTRSPDTRPRTTRLPDFLA-TLMSTALP-RYGCYENDRWY 91
>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
Length = 3342
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 407 NREEPSRSGQADADFDPFGLDRFLSEAKRADKSARKREHHDRHDQHGKKRRD*P 568
++ P++ G D +++ ++E +R + K++HH H Q K+ D P
Sbjct: 836 SKRRPAQHGTNSVSNDSKNMNKPINEKQRHHQQG-KQQHHRLHQQQRHKKNDNP 888
>SB_42826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +2
Query: 272 NADXDNYSDIDAIANTRRFVADKEFAGTSSTNAR-SGPVQFEK-DAPNREEPSRSGQADA 445
NAD + SD D +N + +D++ + S T +R ++ E D + E+ S S + +A
Sbjct: 23 NADLEEESDTDTASNVK---SDEDMSSVSGTESRIDSEIESEDGDYDSEEKESESEKQEA 79
Query: 446 DFD-PFGLDRFLSEAK 490
+ + P + ++EAK
Sbjct: 80 EGEIPEHWEVLINEAK 95
>SB_24036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2208
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -2
Query: 322 SSISNGVDITVV----ILIGVPRRPVDVGSDVVLITPRFVIHVVRFVITVTAVHPFGVI 158
+ + GVD VV +++GV VDV +DVV V+ V FV+ V GV+
Sbjct: 1879 TDVVTGVDTLVVGVDTLVVGVDTLVVDVDTDVVTGVETLVVGVDTFVVGVDTDVVTGVV 1937
>SB_24035| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 902
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = -2
Query: 322 SSISNGVDITVV----ILIGVPRRPVDVGSDVVLITPRFVIHVVRFVITVTAVHPFGVI 158
+ + GVD VV +++GV VDV +DVV V+ V FV+ V GV+
Sbjct: 343 TDVVTGVDTLVVGVDTLVVGVDTLVVDVDTDVVTGVETLVVGVDTFVVGVDTDVVTGVV 401
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = -2
Query: 316 ISNGVDITVV----ILIGVPRRPVDVGSDVVLITPRFVIHVVRFVITV 185
+ GVD VV +++GV V V +DVV FV+ V FV+ V
Sbjct: 412 VPTGVDTLVVGVDTLVVGVDTLVVGVDTDVVTGVDTFVVGVETFVVGV 459
>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 2675
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Frame = +2
Query: 185 YGDDEAYNVYDKPWRNQDNI---GTHIYRPTRNADXDNYSDIDAIANTR 322
Y D E +P R++ + T YRPT N + DNY+ + N R
Sbjct: 517 YCDQEETGKTLRPGRSRGQLTADSTSDYRPTDNKEADNYTPDNQTTNNR 565
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +2
Query: 410 REEPSRSGQADADFDPFGLDRFLSEAKRADKSARKREHHDRHDQHGKKRRD*P 568
RE +R F G + S+ R+ DR+D HG RRD P
Sbjct: 509 RERDARYSSRGDSFGDKGESSWRSDGGGEFGGRGDRDRSDRYDDHGADRRDAP 561
>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
Length = 260
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = +2
Query: 305 AIANTRRFVADKEFAGTSSTNARSGPVQFEKDAPNREEPSRSGQADADFDPFGLD 469
A+ + V KEF S + V+ +K A + E AD DFDPF D
Sbjct: 180 ALVESDNTVGSKEFPKESHKPFK---VKKDKKAEKKAEKKEEKPADDDFDPFAED 231
>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
Length = 310
Score = 27.9 bits (59), Expect = 7.1
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Frame = -2
Query: 298 ITVVILIGVPRRPVDVGSDVVLITPRFVIHVVRF-VITVTAVHPFG---VIEEPLVEHGF 131
+ VV+++ V V V VV++T F++ ++RF ++T + +HP I + +
Sbjct: 174 VVVVVVVVVVVVVVVVVVVVVVVTNNFIV-LIRFCLVTYSTLHPLSHHIKIGDKFGDPTL 232
Query: 130 SSLRRLGRHAEGDLFRYISLAVFY*FRSLIRCS 32
+++R RH D +S VF+ F RCS
Sbjct: 233 NAVREKQRHKTQDHRSALSDLVFFLFD---RCS 262
>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Frame = -1
Query: 488 SPRSGTD----PDRTGRSPRPPDRSGKVLHDSARPSQTGQVQNE 369
SPRS T P SP+PP +G +D PS T E
Sbjct: 568 SPRSDTTTLSAPQSGQNSPKPPSDAGSQSNDQVAPSTTPTTTQE 611
>SB_26083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 467 DRFLSEAKRADKSARKREHHDRHDQHGKKRR 559
++FL K++ K R +H DR + KKRR
Sbjct: 131 EKFLELLKKSTKVVRPDDHPDRQTKSKKKRR 161
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,125,263
Number of Sequences: 59808
Number of extensions: 394652
Number of successful extensions: 1717
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1701
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -