Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J06
(623 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77180.1 68414.m08991 chromatin protein family contains Pfam ... 124 5e-29
At3g52220.1 68416.m05737 expressed protein 31 0.62
At2g38780.1 68415.m04761 expressed protein 30 1.1
At5g26610.2 68418.m03181 D111/G-patch domain-containing protein ... 29 2.5
At5g26610.1 68418.m03180 D111/G-patch domain-containing protein ... 29 2.5
At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein... 29 2.5
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 29 2.5
At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid... 29 3.3
At4g23880.1 68417.m03433 expressed protein 29 3.3
At3g04560.1 68416.m00484 expressed protein 28 4.4
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 28 4.4
At5g04885.1 68418.m00512 glycosyl hydrolase family 3 protein con... 27 7.7
At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM do... 27 7.7
At4g07943.1 68417.m01271 hypothetical protein similar to At4g052... 27 7.7
At3g30640.1 68416.m03878 Ulp1 protease family protein contains P... 27 7.7
At1g10410.1 68414.m01173 expressed protein similar to ESTs gb|N9... 27 7.7
At1g01770.1 68414.m00096 expressed protein 23 8.3
>At1g77180.1 68414.m08991 chromatin protein family contains Pfam
domain, PF02731: SKIP/SNW domain found in chromatin
proteins.
Length = 613
Score = 124 bits (299), Expect = 5e-29
Identities = 76/181 (41%), Positives = 108/181 (59%), Gaps = 10/181 (5%)
Frame = +2
Query: 2 ERQRDRNLSR--AAPDKRSKLVKDRERDISEQIALGMPAKSAQGA-EAMFDQRLFNNTKG 172
ER+R+R L AA K+SK+ +DR+RDISE++ALGM + +G E M+DQRLFN KG
Sbjct: 410 ERERERRLDAKDAAMGKKSKITRDRDRDISEKVALGMASTGGKGGGEVMYDQRLFNQDKG 469
Query: 173 MDSGYGDDEAYNVYDKP-WRNQDNIGTHIYRPTRNADXDNYSD----IDAIANTRRFVAD 337
MDSG+ D+ YN+YDK + Q + T +Y+P ++ D + Y + +D I NT RF D
Sbjct: 470 MDSGFAADDQYNLYDKGLFTAQPTLST-LYKPKKDNDEEMYGNADEQLDKIKNTERFKPD 528
Query: 338 KEFAGTSST--NARSGPVQFEKDAPNREEPSRSGQADADFDPFGLDRFLSEAKRADKSAR 511
K F G S + R PV+FEK+ EE DPFGL++++S+ K+ K
Sbjct: 529 KAFTGASERVGSKRDRPVEFEKE----EEQ----------DPFGLEKWVSDLKKGKKPLD 574
Query: 512 K 514
K
Sbjct: 575 K 575
>At3g52220.1 68416.m05737 expressed protein
Length = 237
Score = 31.1 bits (67), Expect = 0.62
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 392 EKDAPNREEPS-RSGQADADFDPFGLDRFLSEAKRADKSARKREHHDRHDQHGKKRR 559
++DA + P+ SG + P ++R + +R ++ KRE +RHD+ K+ R
Sbjct: 150 KEDADSARLPADTSGVKTVEDGPDDVERDQKKDRREERKPAKREKEERHDRREKRER 206
>At2g38780.1 68415.m04761 expressed protein
Length = 435
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/66 (25%), Positives = 30/66 (45%)
Frame = +2
Query: 344 FAGTSSTNARSGPVQFEKDAPNREEPSRSGQADADFDPFGLDRFLSEAKRADKSARKREH 523
F + S + +S + + N P RS + + D DP L +EA + KS +K+
Sbjct: 19 FFFSPSQHPKSLKLSLFRTRSNSSSPDRSSEVELDVDPVKLALKKAEAYKKSKSEQKKPE 78
Query: 524 HDRHDQ 541
+ D+
Sbjct: 79 KNAGDE 84
>At5g26610.2 68418.m03181 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/50 (20%), Positives = 30/50 (60%)
Frame = +2
Query: 2 ERQRDRNLSRAAPDKRSKLVKDRERDISEQIALGMPAKSAQGAEAMFDQR 151
+++++R +++ A ++ ++ ++++ E + + PAK+ A+ DQR
Sbjct: 211 QQRQEREMTKMADARKQHQMQQSQQEVPENVPVSAPAKTTVAPLAVQDQR 260
>At5g26610.1 68418.m03180 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/50 (20%), Positives = 30/50 (60%)
Frame = +2
Query: 2 ERQRDRNLSRAAPDKRSKLVKDRERDISEQIALGMPAKSAQGAEAMFDQR 151
+++++R +++ A ++ ++ ++++ E + + PAK+ A+ DQR
Sbjct: 211 QQRQEREMTKMADARKQHQMQQSQQEVPENVPVSAPAKTTVAPLAVQDQR 260
>At5g05660.1 68418.m00622 zinc finger (NF-X1 type) family protein
contains PF01422: NF-X1 type zinc finger
Length = 912
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -1
Query: 278 RRSSSAGRCGFRCCPDYATVCHTRCTLRHHRNRCP 174
+RS S +C RC + C C R H CP
Sbjct: 626 KRSESCEKCDLRCQKERTPRCQHPCPRRCHPEDCP 660
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 392 EKDAPNREEPSRSGQADADFDPFGLDRFLSEAKRADKSARKREHHDRHDQHGKKRRD 562
E++A REE R + +A + KR ++ ARKRE + ++ KRR+
Sbjct: 450 EEEARKREEAKRREEEEAKRRE---EEETERKKREEEEARKREEERKREEEEAKRRE 503
>At5g24030.1 68418.m02823 C4-dicarboxylate transporter/malic acid
transport family protein weak similarity to SP|P25396
Tellurite resistance protein tehA. {Escherichia coli};
contains Pfam profile PF03595: C4-dicarboxylate
transporter/malic acid transport protein
Length = 635
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/80 (23%), Positives = 34/80 (42%)
Frame = +2
Query: 173 MDSGYGDDEAYNVYDKPWRNQDNIGTHIYRPTRNADXDNYSDIDAIANTRRFVADKEFAG 352
++SG GDD+ ++ DN H++R ++ N + R+ + K ++G
Sbjct: 138 IESGNGDDDRR-------QSHDNHHHHLHRQHQSGHHQNQNQAANKLKDNRYNSFKTWSG 190
Query: 353 TSSTNARSGPVQFEKDAPNR 412
P E +APNR
Sbjct: 191 KLERQFTRKPASVEPEAPNR 210
>At4g23880.1 68417.m03433 expressed protein
Length = 199
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = +2
Query: 470 RFLSEAKRADKSARKREHHDRHDQHGKKRRD*PXYFVR 583
R L AKR DKS R E + D+ KK P VR
Sbjct: 51 RCLQRAKRIDKSLRFEEGEEEEDEQNKKPLAKPRKVVR 88
>At3g04560.1 68416.m00484 expressed protein
Length = 417
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +2
Query: 416 EPSRSGQADA-DFDPFGLDRFL-SEAKRADKSARKREHHDRHDQHGKK 553
E + +G +A + DPFGLD ++ S K+ K+ KR + D + K+
Sbjct: 259 EAASAGDNEAVESDPFGLDAWIPSSGKKNGKTKIKRTNEDPDAEENKR 306
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/83 (22%), Positives = 34/83 (40%)
Frame = +2
Query: 266 TRNADXDNYSDIDAIANTRRFVADKEFAGTSSTNARSGPVQFEKDAPNREEPSRSGQADA 445
T+ D D++SD + A + V + F G + + G + E+ ++D
Sbjct: 74 TQQDDDDDFSDKVSAAGVKDDVPEIAFVGKKKSKGKKGGGSVSFALLDDEDEKEDNESDG 133
Query: 446 DFDPFGLDRFLSEAKRADKSARK 514
D D + F + K A K +K
Sbjct: 134 DKDDEPVISFTGK-KHASKKGKK 155
>At5g04885.1 68418.m00512 glycosyl hydrolase family 3 protein
contains Pfam profiles PF00933: Glycosyl hydrolase
family 3 N terminal domain, PF01915: Glycosyl hydrolase
family 3 C terminal domain
Length = 665
Score = 27.5 bits (58), Expect = 7.7
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Frame = -2
Query: 361 TTRPSEFFVSDKPSSISNGVDITVVILIGVPRRPVDVGSDVVLITPRFVIHVVRFVITVT 182
+T P + + ++I G+D+ +V P + +D+ + I V R V
Sbjct: 318 STPPHTHYTASVRAAIQAGIDMVMV-----PFNFTEFVNDLTTLVKNNSIPVTRIDDAVR 372
Query: 181 AV----HPFGVIEEPLVEHGFSSLRRLGRHAEGDLFR 83
+ G+ E PL ++ FSS LG A DL R
Sbjct: 373 RILLVKFTMGLFENPLADYSFSS--ELGSQAHRDLAR 407
>At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM
domain-containing protein low similarity to polyamine
oxidase isoform-1 [Homo sapiens] GI:14860862; contains
Pfam profiles PF01593: amine oxidase flavin-containing,
PF04433: SWIRM domain
Length = 1265
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 62 KDRERDISEQ--IALGMPAKSAQGAEAMFDQRLFNNTKGMDSG 184
K R++ + E+ ALG ++ A F +RL N KG++SG
Sbjct: 53 KQRQKQVVEKKLSALGKASEDMDDTLASFRKRLKGNKKGVESG 95
>At4g07943.1 68417.m01271 hypothetical protein similar to At4g05290,
At3g42740, At5g35010, At5g36840, At3g43390, At2g14770,
At2g05560, At4g08880, At1g34730
Length = 213
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -1
Query: 287 YPXRRSSSAGRCGFRCCPDYATVCHTRCTLRHHR-NRCPSLWC 162
Y +S S CG PD A +C+ R L ++ N C WC
Sbjct: 163 YTYAKSFSYPECGDIRTPDCAMMCYMRSGLFNNLCNECYIWWC 205
>At3g30640.1 68416.m03878 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 661
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 41 DKRSKLVKDRERDISEQIALGMPAKSAQGAEA 136
+K+ KLVKD++ D+SE A ++G +
Sbjct: 46 EKKKKLVKDKDADVSETPAKKQKVSHSEGVHS 77
>At1g10410.1 68414.m01173 expressed protein similar to ESTs
gb|N96021 and gb|N96863
Length = 485
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 410 REEPSRSGQADADFDPFGLDRFLSEAK 490
RE+ + A ++PFG+D FLSE K
Sbjct: 249 REKKKEFAPSHAAYNPFGVDVFLSEHK 275
>At1g01770.1 68414.m00096 expressed protein
Length = 632
Score = 23.4 bits (48), Expect(2) = 8.3
Identities = 8/33 (24%), Positives = 17/33 (51%)
Frame = -2
Query: 196 VITVTAVHPFGVIEEPLVEHGFSSLRRLGRHAE 98
+ V +H V+ +++ G + RR+ RH +
Sbjct: 586 IYDVEGIHAMNVVVRNILDGGVNCSRRIDRHGK 618
Score = 22.2 bits (45), Expect(2) = 8.3
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = -2
Query: 274 VPRRPVDVGSDVVLITPRFVIHVVRFVITVTA 179
+P DV ++ITP++V HV+ +++ ++
Sbjct: 538 IPHYSPDVERLKLIITPQWVKHVMSVLLSTSS 569
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,345,459
Number of Sequences: 28952
Number of extensions: 250241
Number of successful extensions: 1012
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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