Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J05
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.4  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   4.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.7  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.9  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 280 ISNACKTPDDKP 315
           ++NACK  DDKP
Sbjct: 392 LTNACKKKDDKP 403


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 316 PVYRLESYKRLKW 278
           P YRLE  KRL W
Sbjct: 333 PKYRLELQKRLPW 345


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 368 IRPERVKWITFDNPF 412
           I PER ++I F  PF
Sbjct: 525 INPERAEFIEFSKPF 539


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 262 VYYSHNHIVSLLKVSYPQLFCFY 194
           ++Y+ N IV  + +SY  +  FY
Sbjct: 236 LFYTVNLIVPCVSISYLSVLAFY 258


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 259 YYSHNHIVSLLKVSYPQLFCF 197
           YYS+  +++L+  S P   C+
Sbjct: 640 YYSYIGVLTLVATSMPTYICY 660


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = +1

Query: 343 EHITYMMLDKTRKSKMDYVRQSVCNGPETFSVCCGPPPEINP 468
           +H+ Y       +S   YV     +G + F+  C P P   P
Sbjct: 362 QHLHYRQPPTLSESYSSYVNSMYASGAQ-FATPCTPSPPRGP 402


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +1

Query: 334 YNCEHITYMMLDKTRKSKMDYVRQSVC 414
           Y C      ++DK ++++  Y R   C
Sbjct: 144 YACREEKSCIIDKRQRNRCQYCRYQKC 170


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +1

Query: 334 YNCEHITYMMLDKTRKSKMDYVRQSVC 414
           Y C      ++DK ++++  Y R   C
Sbjct: 144 YACREEKSCIIDKRQRNRCQYCRYQKC 170


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,261
Number of Sequences: 438
Number of extensions: 3735
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)