Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J05
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24810.1 68415.m02968 pathogenesis-related thaumatin family p...    31   0.63 
At5g46070.1 68418.m05665 guanylate-binding family protein contai...    29   3.4  

>At2g24810.1 68415.m02968 pathogenesis-related thaumatin family
           protein similar to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile PF00314:
           Thaumatin family
          Length = 193

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 460 INPEDMTLNERCSRAVTAFPTRKQQRVXWSRRHR 561
           ++PE++ ++ RC R+ T+  +R Q R+ W   HR
Sbjct: 68  VSPENVKMH-RCKRSTTSHTSRIQNRLLWKEIHR 100


>At5g46070.1 68418.m05665 guanylate-binding family protein contains
           Pfam domains PF02263: Guanylate-binding protein,
           N-terminal domain and PF02841: Guanylate-binding
           protein, C-terminal domain
          Length = 1060

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 457 EINPEDMTLNERCSRAVTAFPTRKQQRVXWSRRH 558
           ++  E+ +LNERCS  V    ++K++   W R +
Sbjct: 545 KLQGENSSLNERCSTLVKTVESKKEEIKEWIRNY 578


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,478,775
Number of Sequences: 28952
Number of extensions: 264289
Number of successful extensions: 593
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)