Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J04
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0216 - 14954047-14956098 33 0.19
04_03_0922 + 20834195-20836603 31 0.77
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572... 29 1.8
04_03_0916 + 20794240-20794246,20794585-20796545 29 1.8
04_03_0913 + 20777859-20780309 28 5.4
12_02_0244 - 16241243-16241279,16241781-16241848,16241930-162420... 27 7.2
11_04_0041 - 12690287-12690816,12691087-12691378 27 7.2
09_03_0172 - 13072575-13073800,13075919-13076054 27 7.2
11_04_0009 - 12132781-12133272 27 9.5
05_06_0268 + 26792845-26792891,26793050-26793830 27 9.5
05_06_0010 - 24835896-24836131,24836838-24837111,24837314-248374... 27 9.5
04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864 27 9.5
04_03_0914 + 20788103-20789642,20790036-20790529 27 9.5
03_02_0423 + 8321076-8322164 27 9.5
>11_04_0216 - 14954047-14956098
Length = 683
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 508 FGKRETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSPQRVV 371
FG GF G+ E+R+E P VE+++C + + +R++
Sbjct: 249 FGSSSDGDGFSDGVEEKRLECDPVSVEIKKCEPPAKSLSSVSRRIL 294
>04_03_0922 + 20834195-20836603
Length = 802
Score = 30.7 bits (66), Expect = 0.77
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 211 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 342
QP+ QC P + +EL C+C G ++ +DW + DR
Sbjct: 290 QPKVQCDVFAVCGPFTICNDNELGFCKCMKGFSIKSPKDWELDDR 334
>08_01_0663 +
5721902-5723176,5724162-5724233,5724405-5724560,
5724655-5724844,5725173-5725255
Length = 591
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 316 LEHVVHSGTDSVEVRNLRNIWQVFSGECFGTEIVVVVME 200
LE + HSG + +V L N W ++ F + VV+V E
Sbjct: 417 LELLAHSGEVNKQVPRLSNFWNMYFTHHFQVDTVVMVRE 455
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 211 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 342
QP+ QC P + +EL +C C G + +DW + DR
Sbjct: 135 QPKAQCDVYSICGPFTVCTDNELPNCNCIKGFTITSLEDWVLEDR 179
>04_03_0913 + 20777859-20780309
Length = 816
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +1
Query: 211 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 342
QP+ C P +EL HC C G V +DW + DR
Sbjct: 288 QPKAPCDVYAICGPFTVCIDNELPHCNCIKGFTVTSLEDWELEDR 332
>12_02_0244 -
16241243-16241279,16241781-16241848,16241930-16242032,
16242095-16242256,16242305-16242369,16242547-16242612,
16242738-16242829,16243029-16243134,16243231-16243279,
16243387-16243540,16243661-16243687,16243797-16243959,
16244621-16244701
Length = 390
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -3
Query: 334 RCTNLVLEHVVHSGTDSVEVRN--LRNIWQVFSGECF 230
R NLV+++V HSG + +++ LRN+ FS CF
Sbjct: 354 RLQNLVMQNVDHSGGEFIDLLQGLLRNMLFGFSRICF 390
>11_04_0041 - 12690287-12690816,12691087-12691378
Length = 273
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 402 SRLRPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPNIS 515
SRLRP+R S P RS + +S R P+ P S
Sbjct: 138 SRLRPNRCLSEPFRRSGTLVFMSGREEPSFAEPEPEPS 175
>09_03_0172 - 13072575-13073800,13075919-13076054
Length = 453
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 382 QRVVITIKDIGVSGGRRCTNLVLEHVV 302
+ V++T+KD+ GGR CT L E +
Sbjct: 281 RNVILTMKDLTAVGGRFCTYLSKEKAI 307
>11_04_0009 - 12132781-12133272
Length = 163
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 263 PQVPNFNTVGAGVDYMFKDKIGASATAAHTDVFNRNDYSLGG 388
P V +F+ G GVD M + + A+A++A D+S GG
Sbjct: 19 PPVADFD--GEGVDGMAPEAVNATASSARLGAVASGDWSGGG 58
>05_06_0268 + 26792845-26792891,26793050-26793830
Length = 275
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +3
Query: 231 KHSPLKTCQIFLKFRTSTLS---VPEWTTCSRTRLVHLRPPLTP 353
KH ++TC + + + + + +P+W ++ + +PP TP
Sbjct: 98 KHRAIRTCLLTVAYHSPSSEPSVIPDWDCSKQSTVNPAQPPFTP 141
>05_06_0010 -
24835896-24836131,24836838-24837111,24837314-24837462,
24837813-24838040,24838347-24838587
Length = 375
Score = 27.1 bits (57), Expect = 9.5
Identities = 26/75 (34%), Positives = 34/75 (45%)
Frame = +2
Query: 218 DFSAKAFATKNLPNIPQVPNFNTVGAGVDYMFKDKIGASATAAHTDVFNRNDYSLGGKLN 397
DF A+ F LP + N ++V GV++ GA AT D F RN+ +
Sbjct: 78 DFIAEEFELPLLP--ASMANSSSVSNGVNFAVG---GALATGI--DYFERNN------IV 124
Query: 398 LFKTPTTSLDFNAGW 442
FK TSLD GW
Sbjct: 125 SFKLLNTSLDVQLGW 139
>04_04_1293 - 32418156-32418584,32420155-32420270,32421798-32421864
Length = 203
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +2
Query: 266 QVPNFNTVGAGVDYMFKDKIGASATAAHTDVFNRNDYSLGGKLNLFKTPTTSLDFNAG 439
+ P + A D + + A+A A VF+ D+ +GGK + PT + D + G
Sbjct: 34 EAPGGGALLAAGDDVTAANLFAAAVATEGPVFDMPDFKMGGKKSDDAAPTDAGDEDGG 91
>04_03_0914 + 20788103-20789642,20790036-20790529
Length = 677
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 211 QPRFQCQSIRH*KPAKYSSSSELQHCRCRSGLHVQG-QDWCICDR 342
QP+ QC P +EL +C C G + +DW + DR
Sbjct: 289 QPKSQCDVYAVCGPYTICIDNELPNCNCIKGFTITSHEDWELEDR 333
>03_02_0423 + 8321076-8322164
Length = 362
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 336 RPPLTPMSLIVMTTLWGEN*ISSRLRPHRWTSTPVGRSSIRLSLSP 473
+PP + ++L T W + + R H W + GR + RL P
Sbjct: 246 QPPGSALTLSTSDTYWRMSLPAGATRDHPWCNPVTGRGAPRLDSLP 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,741,577
Number of Sequences: 37544
Number of extensions: 354876
Number of successful extensions: 894
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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