Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J04
         (534 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              30   1.4  
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_44767| Best HMM Match : WD40 (HMM E-Value=0.074)                    27   9.6  
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)                  27   9.6  
SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +2

Query: 128 GATLTKTHIPGFGDKMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQ-VPNFNTVGAG 298
           G+T   T IPG G    + GK ++  N  H  S  A         P  VP   T GAG
Sbjct: 322 GSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGKGEEPTIVPEMTTQGAG 379


>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +3

Query: 273  RTSTLSVPEWTTCSRTRLVHLRPPLTPMSLIVMTTLWGEN*ISSRLRPHRWTSTPVGRSS 452
            ++  +S P W   +RT L+H       + L  +  L+G+   SS L  HRW S  VG S 
Sbjct: 1083 QSKLMSTPHWNQSARTSLLH------SVCLRYIEVLFGK---SSSL--HRWGSPKVGESP 1131

Query: 453  IRLS 464
             R +
Sbjct: 1132 TRFA 1135


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = -3

Query: 502 KRETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSPQRVVITIKDIGVSGGRRCT 326
           K E  A  P  L  R    L   + +  CG   + IQ S  R V T+    VS G +CT
Sbjct: 304 KTEIQASHPTALIRRSCICLMRALALT-CGLHADSIQTSQVRTVSTLLHKLVSAGTKCT 361


>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +2

Query: 161 FGDKMTAAGKVNLFH---NDNHDFSAKAFATKNLPNIPQVPNFNTV 289
           FGDK   A  +  FH   ND  D S  +  T+ + ++  +P + TV
Sbjct: 587 FGDKWIGANTIRAFHHTDNDGIDASENSNLTRIIFDLSTLPMYETV 632


>SB_44767| Best HMM Match : WD40 (HMM E-Value=0.074)
          Length = 532

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 262 SSSSELQHCRCRSGLHVQGQDW 327
           SS  +LQ C+  +G H+Q +DW
Sbjct: 332 SSRVDLQACKLGTGRHLQRRDW 353


>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
          Length = 550

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +2

Query: 14  ITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDKMTAAG-- 187
           +T  E  +L ALG   +T+ +     T  L++ N +   A+  K+ I   G   T     
Sbjct: 408 VTAMEEDQLVALG---VTHVLNAAQGTKRLSHVNTD---ASFYKSGIIFHGIPATDVFMF 461

Query: 188 KVNLFHNDNHDFSAKAFATKNLP 256
           K+N + ++  DF A A  TKN P
Sbjct: 462 KLNKYFDEAADFIASAVGTKNCP 484


>SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +2

Query: 65  TNQMKLGAATAGLAYDNVNGHGAT--LTKTHIPGFGDKMTAAGKVNLFHNDNHDFSAKA 235
           TNQ  L        Y+ +N   A   L  + +P  G+K   +G+ N+   D  DFS  A
Sbjct: 59  TNQTLLHVVVLDTQYERMNSTYACALLANSRLPCVGEKDCESGEGNISSIDMKDFSNAA 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,756,361
Number of Sequences: 59808
Number of extensions: 389085
Number of successful extensions: 946
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)