Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J03
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 27 2.0
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 26 3.5
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 4.7
SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.2
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 25 6.2
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 8.1
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 25 8.1
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 25 8.1
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 25 8.1
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 27.1 bits (57), Expect = 2.0
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Frame = +1
Query: 133 SRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYD-- 306
S + +++G + + +GT G + G K S +++ + + + AA + +
Sbjct: 1228 SVINQESGKIELFMEGT-GLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIG 1286
Query: 307 -NVNGHGATLTKTHIPGFGDKMTAAGKV 387
+ HG T+ HI GD MT G+V
Sbjct: 1287 YTMAKHGLTVDPRHIMLLGDVMTCKGEV 1314
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -1
Query: 462 LRNIWHVFSGECFGT--EIVVVVMEEIYFTGSRHFV 361
+ IW V SG+C T E + V + + FT +R ++
Sbjct: 203 MARIWDVLSGQCLKTLVEPINVPLSNLQFTENRKYL 238
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.8 bits (54), Expect = 4.7
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 235 SALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDKMTAAGKVNLFHNNN 408
+A SV++ N ++ +A++G +NG GA T F + NL HNNN
Sbjct: 1036 TAGASVEIQNNIE--SASSGGDKTQLNGPGADQPVTATITFDKTSPWRNRENLSHNNN 1091
>SPAC1565.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 484 GAGVDYMFKDKIGASATAAHTDVFNRNDYSLGG 582
G+G +F DK G A F++ DYS G
Sbjct: 61 GSGASIIFADKAGLKFEAERYGKFDQIDYSTKG 93
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 6.2
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 397 HNNNHDFSAKAFATKNMPNIPQVPNFNTVGAGVDYMFKDK 516
H N SA ++ ++ PQ F+T G+ + F DK
Sbjct: 244 HRNQAGNSADVYSVNSIAFHPQYGTFSTAGSDGTFSFWDK 283
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 304 DNVNGHGATLTKTHIPGFGDKMTAAGKVNL 393
+N AT T T GFGDK + AGK N+
Sbjct: 251 ENKESTTATSTLTDA-GFGDKSSTAGKHNV 279
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.0 bits (52), Expect = 8.1
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 175 DGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPG 354
D +SGA++ V T + GS+ T+ + T+G + V T+T+T I G
Sbjct: 792 DTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSG-TVEVVEPTAGTVTETIISG 850
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 8.1
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +2
Query: 296 WLMTT*TDTERPSQKLISLGSVTK*RLPVKXXXXXXXXXXXVPKHSPLKTCQIFLKFRTS 475
WL+ ++TE P+Q+L +L S++K + + + T + KF T+
Sbjct: 192 WLLEHCSETEIPAQQLQALPSLSKNTVNESSLVRKLNLEKSTSRELRIPTQTLEPKFTTN 251
Query: 476 TLS-VPEWTTCSKI 514
T E +CS +
Sbjct: 252 TAKYANELVSCSML 265
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 25.0 bits (52), Expect = 8.1
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -1
Query: 471 VRNLRNIWHVFSGEC 427
+ N R++WH F G C
Sbjct: 126 IHNYRDLWHSFKGMC 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,404,572
Number of Sequences: 5004
Number of extensions: 49178
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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