Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J03
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0) 31 0.91
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3) 30 1.2
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 29 2.8
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0) 28 4.9
SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31) 28 6.4
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37) 28 6.4
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039) 28 6.4
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1778
Score = 31.9 bits (69), Expect = 0.40
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = +1
Query: 106 EDQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAA 285
+++P V+ + TIN + +K + GN + L A S N K G
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707
Query: 286 TAGLAY-DNVNGHGATLT-KTHIPGFGDKMTAAGKVN 390
++Y DN+N A T + IPG K + KVN
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSKTGSDSKVN 744
>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
Length = 751
Score = 30.7 bits (66), Expect = 0.91
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +1
Query: 322 GATLTKTHIPGFGDKMTAAGKVNLFHNNNHDFSAKAFATKNMPNIPQ-VPNFNTVGAG 492
G+T T IPG G + GK ++ N H S A P VP T GAG
Sbjct: 322 GSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGKGEEPTIVPEMTTQGAG 379
>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
Length = 811
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = -1
Query: 183 GTIRVDSESTRL---PAHPRVSPLLRLILILFD---VVTRLFNKHVTAV 55
G + V+ + RL HPR SPLL+L+ D VV LF +HV AV
Sbjct: 614 GKVAVEEKRPRLLRSEFHPRRSPLLQLLSNTPDVHVVVVELFQRHVHAV 662
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 476 TLSVPEWTTCSKIKLVHLRPPHTPMSLTATTTLWAE 583
TLS + T+ S ++ PPH+P + T TTT E
Sbjct: 1748 TLSTLKTTSTSTSTTKYIPPPHSPPTTTTTTTTTPE 1783
>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
Length = 1325
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -1
Query: 210 YGYLDHSTGGTIRVDSESTRLPAHPRVSPL 121
Y YL H T T + DS STR+ RV L
Sbjct: 935 YAYLHHDTRTTCKYDSYSTRIYTATRVRQL 964
>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/61 (32%), Positives = 26/61 (42%)
Frame = +1
Query: 301 YDNVNGHGATLTKTHIPGFGDKMTAAGKVNLFHNNNHDFSAKAFATKNMPNIPQVPNFNT 480
Y NGH L ++ P T V F NN+DFS++ A N PN+ F
Sbjct: 273 YTPTNGH-FQLDESVFPNSDSPDTRDQTVESFEINNNDFSSQENAQSN-PNLDNNDRFRP 330
Query: 481 V 483
V
Sbjct: 331 V 331
>SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)
Length = 624
Score = 27.9 bits (59), Expect = 6.4
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Frame = +1
Query: 76 EEPGYYIEQYE--DQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGS 249
E Y E+YE D AN QA + N+ ++G ++ + ++G + K+ A S
Sbjct: 113 ERSEYGGERYETSDFQRSVANRYKELQADSWKKNNVTSAGGLLSLDLSGEGHFKVHANAS 172
Query: 250 VDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGF 357
+ + Y + A L HIPGF
Sbjct: 173 TAIPAAETTDWPQENI-YSTIQYQEAPLPPAHIPGF 207
>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
Length = 1655
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 1 HSKMFAKLFLVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDG 180
HS + L L L+ GV + +++ Y E ++ E W + R+ + AGAL++ S
Sbjct: 1039 HSYLLTNLALADFLM-GVYMLLIAIKDVEYQGEYFKHDIE-WRSGRLCQFAGALSLTSSE 1096
Query: 181 TS 186
S
Sbjct: 1097 VS 1098
>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
Length = 685
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 266 WLVRSTEPRALSLWFSLPVMGTLTIAPEVPSELIV 162
W+V ++EP LS + ++ T +I P P I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506
>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1016
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 252 D*TKSTELVVFIASYGYLDHSTGGTIRVDSES 157
D +K+ E + IA++ L+H+ G I DSES
Sbjct: 800 DLSKALEDIKNIAAFNVLEHAKSGEIESDSES 831
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.131 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,760,003
Number of Sequences: 59808
Number of extensions: 399571
Number of successful extensions: 932
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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