Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J02
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0256 + 21331396-21332268                                         32   0.23 
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440...    29   2.1  
07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    27   6.5  
02_05_0874 - 32377906-32378131,32378269-32378384,32378516-323789...    27   8.6  

>02_04_0256 + 21331396-21332268
          Length = 290

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 21/54 (38%), Positives = 27/54 (50%)
 Frame = -2

Query: 213 HSTGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTRLFNKHVTAVDADQENR 52
           HS    I + S + RL AHP   P +RLIL+  D +  LF     A  AD + R
Sbjct: 129 HSPSDLISLLSRAQRLLAHPGRLPPVRLILV--DSIASLFRADFDASPADLKRR 180


>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
            44090-44322,45308-45412,45531-45705,46443-46658
          Length = 977

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 61   LVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDGTSGAMVKV 222
            L G+ SR V    P + ++ Y D+ EQW   R R  +  L I+ + + G+  +V
Sbjct: 886  LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935


>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 169 AGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 342
           AG  + +     G  V   + G +NH +S +G          GA TAG AY+ +N  G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226


>02_05_0874 -
           32377906-32378131,32378269-32378384,32378516-32378921,
           32379023-32379139,32379229-32379291,32380183-32380373
          Length = 372

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 308 AVAAPNFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVPSEL 186
           AV AP  +W  R   PR L+L   L +MG   + P +   L
Sbjct: 53  AVMAPFALWFERRVRPR-LTLIIFLKIMGLAILEPVLDQNL 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,310,413
Number of Sequences: 37544
Number of extensions: 271243
Number of successful extensions: 606
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)