Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J02
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.31 
SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)                    30   0.94 
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              28   3.8  
SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)                 28   5.0  
SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)                   28   5.0  
SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          28   5.0  
SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)                 27   8.8  
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)                  27   8.8  
SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9)                       27   8.8  

>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1778

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
 Frame = +1

Query: 124 EDQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAA 303
           +++P       V+ +    TIN    +   +K  + GN +  L A  S    N  K G  
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707

Query: 304 TAGLAY-DNVNGHGATLT-KTHIPGFGDKMTAAGKVN 408
              ++Y DN+N   A  T +  IPG   K  +  KVN
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSKTGSDSKVN 744


>SB_48089| Best HMM Match : DUF638 (HMM E-Value=3.3)
          Length = 811

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = -2

Query: 201 GTIRVDSESTRL---PAHPRVSPLLRLILILFD---VVTRLFNKHVTAV 73
           G + V+ +  RL     HPR SPLL+L+    D   VV  LF +HV AV
Sbjct: 614 GKVAVEEKRPRLLRSEFHPRRSPLLQLLSNTPDVHVVVVELFQRHVHAV 662


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 228  YGYLDHSTGGTIRVDSESTRLPAHPRVSPL 139
            Y YL H T  T + DS STR+    RV  L
Sbjct: 935  YAYLHHDTRTTCKYDSYSTRIYTATRVRQL 964


>SB_26853| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +1

Query: 319 YDNVNGHGATLTKTHIPGFGDKMTAAGKVNLFHNNNHDFSAKAFATKNMPNIPQVPNFNT 498
           Y   NGH   L ++  P      T    V  F  NN+DFS++  A  N PN+     F  
Sbjct: 273 YTPTNGH-FQLDESVFPNSDSPDTRDQTVESFEINNNDFSSQENAQSN-PNLDNNDRFRP 330

Query: 499 V 501
           V
Sbjct: 331 V 331


>SB_34654| Best HMM Match : zf-C2H2 (HMM E-Value=8e-31)
          Length = 624

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
 Frame = +1

Query: 94  EEPGYYIEQYE--DQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGS 267
           E   Y  E+YE  D     AN     QA +   N+  ++G ++ + ++G  + K+ A  S
Sbjct: 113 ERSEYGGERYETSDFQRSVANRYKELQADSWKKNNVTSAGGLLSLDLSGEGHFKVHANAS 172

Query: 268 VDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGF 375
             +            + Y  +    A L   HIPGF
Sbjct: 173 TAIPAAETTDWPQENI-YSTIQYQEAPLPPAHIPGF 207


>SB_18269| Best HMM Match : CUB (HMM E-Value=7.4e-37)
          Length = 1655

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = +1

Query: 19   HSKMFAKLFLVSVLLVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDG 198
            HS +   L L   L+ GV    + +++  Y  E ++   E W + R+ + AGAL++ S  
Sbjct: 1039 HSYLLTNLALADFLM-GVYMLLIAIKDVEYQGEYFKHDIE-WRSGRLCQFAGALSLTSSE 1096

Query: 199  TS 204
             S
Sbjct: 1097 VS 1098


>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 284 WLVRSTEPRALSLWFSLPVMGTLTIAPEVPSELIV 180
           W+V ++EP  LS    + ++ T +I P  P   I+
Sbjct: 472 WVVETSEPLQLSTTIMISIITTTSILPSFPPTAII 506


>SB_33008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1016

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 270 D*TKSTELVVFIASYGYLDHSTGGTIRVDSES 175
           D +K+ E +  IA++  L+H+  G I  DSES
Sbjct: 800 DLSKALEDIKNIAAFNVLEHAKSGEIESDSES 831


>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
          Length = 1336

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 22/87 (25%), Positives = 37/87 (42%)
 Frame = +1

Query: 76   SRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLS 255
            +R   + EP   ++  EDQ E  A+S +R +AG     +D   G + +   T N NH   
Sbjct: 1183 ARKAQINEPPSPLKVQEDQRETEAHSPIRTRAGREATCNDHLKGCVNQA--TCN-NHLKG 1239

Query: 256  ALGSVDLTNQMKLGAATAGLAYDNVNG 336
             +      + +K G        D++ G
Sbjct: 1240 CVNQATCNDHLK-GCVNQATCNDHLKG 1265


>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
          Length = 550

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +1

Query: 205 GAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDK 384
           G  V   +T  E  +L ALG   +T+ +     T  L++ N +   A+  K+ I   G  
Sbjct: 401 GIYVGGAVTAMEEDQLVALG---VTHVLNAAQGTKRLSHVNTD---ASFYKSGIIFHGIP 454

Query: 385 MTAAG--KVNLFHNNNHDFSAKAFATKNMP 468
            T     K+N + +   DF A A  TKN P
Sbjct: 455 ATDVFMFKLNKYFDEAADFIASAVGTKNCP 484


>SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
 Frame = +1

Query: 373 FGDKMTAAG---KVNLFHNNNHDFSAKAF 450
           F ++ T++G   KV LFH  N+ F+AK+F
Sbjct: 35  FAEQDTSSGLTTKVCLFHGKNNPFTAKSF 63


>SB_12713| Best HMM Match : TP2 (HMM E-Value=2.9)
          Length = 349

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 20/87 (22%), Positives = 38/87 (43%)
 Frame = +1

Query: 238 ENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDKMTAAGKVNLFH 417
           +N+K     S D  ++ K  A T+GLA +    +G      ++P   +++    K N   
Sbjct: 83  DNYKKKKTKSKDNNSETKAKAGTSGLAKNKTKDNGT----PNLPSLFERIK---KKNNAT 135

Query: 418 NNNHDFSAKAFATKNMPNIPQVPNFNT 498
            N    S     +   P +P++ +F+T
Sbjct: 136 KNGETTSQVTINSSGTPALPKLASFDT 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,356,059
Number of Sequences: 59808
Number of extensions: 305681
Number of successful extensions: 606
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)