Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_J02
(505 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43990.2 68418.m05382 SET domain-containing protein identical... 28 4.1
At5g43990.1 68418.m05383 SET domain-containing protein identical... 28 4.1
At1g76070.1 68414.m08834 expressed protein 27 5.4
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl... 27 5.4
At5g64360.3 68418.m08085 DNAJ heat shock N-terminal domain-conta... 27 7.2
At5g64360.2 68418.m08084 DNAJ heat shock N-terminal domain-conta... 27 7.2
At5g64360.1 68418.m08083 DNAJ heat shock N-terminal domain-conta... 27 7.2
At3g57030.1 68416.m06348 strictosidine synthase family protein s... 27 7.2
At3g44820.1 68416.m04829 phototropic-responsive NPH3 family prot... 27 7.2
At5g55530.3 68418.m06918 C2 domain-containing protein low simila... 27 9.5
At5g55530.2 68418.m06917 C2 domain-containing protein low simila... 27 9.5
At5g55530.1 68418.m06916 C2 domain-containing protein low simila... 27 9.5
At5g20885.1 68418.m02480 zinc finger (C3HC4-type RING finger) fa... 27 9.5
At3g43430.1 68416.m04597 zinc finger (C3HC4-type RING finger) fa... 27 9.5
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 145 ANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYD 324
+N V +AG +DGT+ + + +HKL+A +++ ++L ++ +G
Sbjct: 219 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 276
Query: 325 NVNGHGAT-LTKTHIP 369
N++ AT + H+P
Sbjct: 277 NLSFAPATGGSNPHLP 292
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 145 ANSRVRRQAGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYD 324
+N V +AG +DGT+ + + +HKL+A +++ ++L ++ +G
Sbjct: 196 SNGHVEEKAGETVSTADGTTNDISPTTVARFSDHKLAA--TIEEPPALELASSASGEVKI 253
Query: 325 NVNGHGAT-LTKTHIP 369
N++ AT + H+P
Sbjct: 254 NLSFAPATGGSNPHLP 269
>At1g76070.1 68414.m08834 expressed protein
Length = 272
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 406 NLFHNNNHDFSAKAFATKNMPNIPQVPN 489
+L HNN+H+++A + P +P VPN
Sbjct: 40 DLHHNNHHNYTAANKMFFSGPMVPLVPN 67
>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
identical to ubiquitin-protein ligase 1 [Arabidopsis
thaliana] GI:7108521; E3, HECT-domain protein family;
similar to GI:7108521, GB:AAF36454 from [Arabidopsis
thaliana]
Length = 3891
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +2
Query: 92 LKSLVTTSNSMRISRSSGLTRGCAGKRVLSLSTLMVPPV 208
++ L T S+ ++SRS+G G + RVL + + + P+
Sbjct: 3298 VRELATLSSKQKMSRSTGSMAGASILRVLQVLSSLTSPI 3336
>At5g64360.3 68418.m08085 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226 DnaJ domain
Length = 464
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -3
Query: 272 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 150
S +P A S W + P L P+ E ++ CRR +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227
>At5g64360.2 68418.m08084 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226 DnaJ domain
Length = 464
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -3
Query: 272 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 150
S +P A S W + P L P+ E ++ CRR +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227
>At5g64360.1 68418.m08083 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226 DnaJ domain
Length = 422
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -3
Query: 272 STEPRALSLWFSLPVMGTLTIAPEVPSELIVRAPACRRTLE 150
S +P A S W + P L P+ E ++ CRR +
Sbjct: 187 SADPMATSFWTACPYCFVLFEYPKAYEECTLKCQECRRAFQ 227
>At3g57030.1 68416.m06348 strictosidine synthase family protein
similar to strictosidine synthase [Rauvolfia
serpentina][SP|P15324]
Length = 374
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 293 NFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVP 195
+F+ +V +T + L LW S P GT + E+P
Sbjct: 231 SFVLVVETTTCKILRLWLSGPNAGTHQVFAELP 263
>At3g44820.1 68416.m04829 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 661
Score = 27.1 bits (57), Expect = 7.2
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +1
Query: 265 SVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDKMTAAGKVNLFHNNNHDFS-A 441
SVDL ++ T G+ +++ G + ++PG G + + F+ A
Sbjct: 264 SVDLFKRLIKTMETKGIRAESLAGAMMYYARKYLPGLGRWQSGTSDSSKSRRRVVSFNLA 323
Query: 442 KAFATKNMPNIPQVPNFNTV 501
KA + +MP + Q+ T+
Sbjct: 324 KASSPSSMPPLDQIALLETI 343
>At5g55530.3 68418.m06918 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 26.6 bits (56), Expect = 9.5
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +1
Query: 181 TINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKT 360
TI+S+ TS ++V + ENH +++ S+ + + AT G A + + H AT T
Sbjct: 242 TIDSE-TSDSLVT---SDAENHVTNSVTSILKQDSPESSNATNGAASPHASAHSATETPN 297
Query: 361 H 363
H
Sbjct: 298 H 298
>At5g55530.2 68418.m06917 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 26.6 bits (56), Expect = 9.5
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +1
Query: 181 TINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKT 360
TI+S+ TS ++V + ENH +++ S+ + + AT G A + + H AT T
Sbjct: 242 TIDSE-TSDSLVT---SDAENHVTNSVTSILKQDSPESSNATNGAASPHASAHSATETPN 297
Query: 361 H 363
H
Sbjct: 298 H 298
>At5g55530.1 68418.m06916 C2 domain-containing protein low
similarity to cold-regulated gene SRC2 [Glycine max]
GI:2055230; contains Pfam profile PF00168: C2 domain
Length = 405
Score = 26.6 bits (56), Expect = 9.5
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +1
Query: 181 TINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKT 360
TI+S+ TS ++V + ENH +++ S+ + + AT G A + + H AT T
Sbjct: 242 TIDSE-TSDSLVT---SDAENHVTNSVTSILKQDSPESSNATNGAASPHASAHSATETPN 297
Query: 361 H 363
H
Sbjct: 298 H 298
>At5g20885.1 68418.m02480 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 176
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 501 DSVEVRDLRNIWHVFSGEC 445
D EVR+LRN H+F EC
Sbjct: 91 DGDEVRELRNCSHMFHREC 109
>At3g43430.1 68416.m04597 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 167
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -2
Query: 501 DSVEVRDLRNIWHVFSGEC 445
D E+R+LRN HVF +C
Sbjct: 92 DEDEIRELRNCTHVFHRDC 110
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,615,389
Number of Sequences: 28952
Number of extensions: 210020
Number of successful extensions: 492
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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