Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J01
         (298 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6ED47 Cluster: Putative ribosomal protein var1; n=1; C...    31   5.1  
UniRef50_Q9U0J6 Cluster: Putative uncharacterized protein PFD044...    30   8.9  
UniRef50_Q6M0U7 Cluster: Putative uncharacterized protein; n=4; ...    30   8.9  

>UniRef50_Q6ED47 Cluster: Putative ribosomal protein var1; n=1;
           Candida stellata|Rep: Putative ribosomal protein var1 -
           Candida stellata (Yeast)
          Length = 279

 Score = 31.1 bits (67), Expect = 5.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 12  KDLSAVSITKL*LYYPTPVILFYLYITTNIYSVTISHYYYK 134
           K+   + + K  ++   P+IL Y Y+ +NI S  +S Y YK
Sbjct: 122 KNNEIIILNKKYIFNIKPIILLYDYLDSNILSKNLSKYIYK 162


>UniRef50_Q9U0J6 Cluster: Putative uncharacterized protein PFD0445c;
            n=2; Plasmodium|Rep: Putative uncharacterized protein
            PFD0445c - Plasmodium falciparum (isolate 3D7)
          Length = 2567

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +3

Query: 30   SITKL*LYYPTPVILFYLYITTNIYSVTISHYYYKGFIHN 149
            S+T L L+Y +P++ + +Y+  NI+   I  YY+KG  +N
Sbjct: 1586 SLTHLYLFY-SPLVYYKIYVC-NIHKDFIFDYYFKGKYYN 1623


>UniRef50_Q6M0U7 Cluster: Putative uncharacterized protein; n=4;
           Methanococcus|Rep: Putative uncharacterized protein -
           Methanococcus maripaludis
          Length = 248

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +3

Query: 66  VILFYLYITTNIYSVTISHY-YYKGFIHNMS 155
           + + ++ + +NI+SVTI+ Y  YK FIH +S
Sbjct: 217 ITIMWMIMASNIFSVTIACYLLYKEFIHQIS 247


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,898,520
Number of Sequences: 1657284
Number of extensions: 4101923
Number of successful extensions: 6738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6730
length of database: 575,637,011
effective HSP length: 75
effective length of database: 451,340,711
effective search space used: 10380836353
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)