Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J01
         (298 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    27   0.78 
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    25   3.1  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    24   4.2  

>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 26.6 bits (56), Expect = 0.78
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = +1

Query: 124 IIIKVLSTTCHCYLNIQ**VKQECGSGIVWNIVQLELK*NRIF*QIWIKFIHIYKSE 294
           I++  L  T   Y N++  ++ + GSG+ W+I  L  + ++ + Q    +I+ +K E
Sbjct: 52  ILLHSLGNTKEGYDNVRLGLRNDVGSGVCWHIFGLISRADKDYVQAAKCYINAHKLE 108


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 99  IYSVTISHYYYKGF 140
           I  VT +H+YYKG+
Sbjct: 17  ISGVTFTHFYYKGY 30


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +1

Query: 118 HTIIIKVLSTTCHCY 162
           H + + +++  CHCY
Sbjct: 127 HCVFVNIITLKCHCY 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,142,826
Number of Sequences: 5004
Number of extensions: 19261
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)