Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J01
         (298 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630...    26   4.6  
02_05_0979 + 33268294-33269595                                         26   4.6  
10_08_0266 + 16326912-16327007,16327132-16327158,16327596-163277...    25   8.0  

>03_06_0646 + 35260497-35262371,35262500-35262683,35262906-35263007,
            35263101-35263231,35263315-35263584,35263765-35263943,
            35264229-35264275,35264452-35264541,35264596-35264645,
            35264673-35264725,35264886-35265009,35265094-35265369,
            35265460-35265593,35265672-35265758,35265864-35265977,
            35266180-35266309
          Length = 1281

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 287  LYMWINLIHIC*NILFYFNSN*TIFQTIPDPHSC 186
            +Y +IN    C  I +YF     +++TI +P+SC
Sbjct: 1227 IYTYINGERYCYRISWYFGIPNWMWKTIRNPNSC 1260


>02_05_0979 + 33268294-33269595
          Length = 433

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 206 IPDPHSCLTYYWI 168
           +P  HSCL +YWI
Sbjct: 336 LPPDHSCLRWYWI 348


>10_08_0266 +
           16326912-16327007,16327132-16327158,16327596-16327754,
           16327917-16328018,16328083-16328175,16328722-16328811,
           16329642-16329650,16329827-16329919,16330000-16330143,
           16330549-16330656,16330921-16330972,16331052-16331086
          Length = 335

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 224 SWN*NKTEYFNRYGLSLSTYI 286
           SW+  K EY +  GLS +TY+
Sbjct: 54  SWSREKEEYLSSRGLSNATYV 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,447,692
Number of Sequences: 37544
Number of extensions: 94365
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)