Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J01
         (298 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)          27   2.1  
SB_48518| Best HMM Match : Kelch_1 (HMM E-Value=0)                     26   4.7  
SB_32866| Best HMM Match : Occludin_ELL (HMM E-Value=0.25)             26   4.7  
SB_7018| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.7  
SB_7410| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-22)                  26   6.3  
SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)               26   6.3  
SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)             25   8.3  

>SB_46909| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.00039)
          Length = 685

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 57  PTPVILFYLYITTNIYSVTISHYYY 131
           PT +I+  + ITT I      HYYY
Sbjct: 502 PTAIIITTIIITTTIIFTICHHYYY 526


>SB_48518| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 481

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 143 PQHVIAILISSNKLNKSADRESFGI*FSW 229
           PQ  +A+L+SS  LN   + E F    +W
Sbjct: 189 PQEELAVLLSSEDLNVDCEEEVFVALIAW 217


>SB_32866| Best HMM Match : Occludin_ELL (HMM E-Value=0.25)
          Length = 1034

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 135 GFIHNMSLLS*YPVIS*TRVRIGNRLEYSSVGIKIKQNIL 254
           G IH +S     PV+    +R+G RLE + VG K K  ++
Sbjct: 753 GPIHKLS-----PVLDGGLLRVGGRLERAPVGYKFKHQMI 787


>SB_7018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 425

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 24  AVSITKL*LYYPTPVILFYLYITTNI-YSVTISHYYY 131
           A SIT L  Y  +   L+Y Y  TN+ Y+ +I+  YY
Sbjct: 16  AYSITDLYYYAYSITDLYYAYSITNLYYAYSITDLYY 52


>SB_7410| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-22)
          Length = 341

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 118 HTIIIKVLSTTCHCYLNI 171
           H I++ ++   CHCYL +
Sbjct: 187 HFIVLVLIPVICHCYLRV 204


>SB_2596| Best HMM Match : Extensin_2 (HMM E-Value=0.083)
          Length = 896

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 75  FYLYITTNIYSVTISHYYYKGFIHNMS 155
           FY++ T   Y++T+ H Y  GF H  S
Sbjct: 852 FYIF-TPQDYAITLLHLYATGFSHYTS 877


>SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)
          Length = 901

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 4   H*ERIYLLYQSPSYNC 51
           H E  Y +YQ PS+NC
Sbjct: 71  HQETYYTIYQVPSHNC 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,939,916
Number of Sequences: 59808
Number of extensions: 123017
Number of successful extensions: 215
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 339527403
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)