Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J01
         (298 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099914-1|AAC68761.1|  285|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z48717-7|CAA88605.1|  518|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U41264-11|AAA82431.2|  550|Caenorhabditis elegans Hypothetical p...    25   7.4  
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p...    25   9.7  

>AF099914-1|AAC68761.1|  285|Caenorhabditis elegans Hypothetical
           protein C40A11.5 protein.
          Length = 285

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +3

Query: 24  AVSITKL*LYYPTPVILFYLYITTNIYSV-----TISHYYYKGFI 143
           A  +  L  +Y   V+L  + IT+N         TI HY+YKG+I
Sbjct: 49  ATDVVMLGDFYENDVVLRTIEITSNFSKSKKETHTIRHYFYKGWI 93


>Z48717-7|CAA88605.1|  518|Caenorhabditis elegans Hypothetical
           protein T10B9.3 protein.
          Length = 518

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 187 QECGSGIVWNIVQ 225
           QECG+ I+WNI Q
Sbjct: 147 QECGTEILWNIEQ 159


>U41264-11|AAA82431.2|  550|Caenorhabditis elegans Hypothetical
           protein F10E7.1 protein.
          Length = 550

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 57  PTPVILFYLYITTNIYSVTISHYYYK 134
           P P I +Y YIT  +  + IS++  K
Sbjct: 291 PNPRIWYYKYITREVIDIIISNWKVK 316


>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical
           protein F21G4.2 protein.
          Length = 1573

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +3

Query: 66  VILFYLYITTNIYSVTISHYYY 131
           V+ F ++ +  + S+ +SHY+Y
Sbjct: 382 VLAFTMFFSAELSSILLSHYFY 403


>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
           protein F21G4.2 protein.
          Length = 1573

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +3

Query: 66  VILFYLYITTNIYSVTISHYYY 131
           V+ F ++ +  + S+ +SHY+Y
Sbjct: 382 VLAFTMFFSAELSSILLSHYFY 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,052,655
Number of Sequences: 27780
Number of extensions: 98798
Number of successful extensions: 165
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)