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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_J01
         (298 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62920.1 68414.m07104 expressed protein ; expression supporte...    26   5.2  
At5g37110.1 68418.m04454 hypothetical protein                          25   6.9  
At1g26620.1 68414.m03242 expressed protein ; expression supporte...    25   6.9  
At5g34540.1 68418.m04035 hypothetical protein                          25   9.1  
At3g22415.1 68416.m02828 expressed protein                             25   9.1  

>At1g62920.1 68414.m07104 expressed protein ; expression supported
           by MPSS
          Length = 260

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 228 QLNYIPNDSRSALLFNLLLDIKIAMTC 148
           QLN +P  S+  +L+N +  +K+  TC
Sbjct: 107 QLNQVPCRSKQFILYNAIKVLKLDSTC 133


>At5g37110.1 68418.m04454 hypothetical protein
          Length = 1307

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 291 RFIYVDKLNPYLLKYSVLF*FQLNYIPNDSRSALLFNLLLDIKIAMTC 148
           RF Y  K   + L+       ++NY+P D        +LL+++    C
Sbjct: 712 RFTYDSKEKKFNLRKKGFAIGRINYVPRDIEDGYYLRILLNVQPGPRC 759


>At1g26620.1 68414.m03242 expressed protein ; expression supported
           by MPSS
          Length = 867

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 154 HCYLNIQ**VKQECGSGIVW 213
           H ++N+Q   +QEC +G+ W
Sbjct: 397 HSFVNLQGPKRQECSAGLPW 416


>At5g34540.1 68418.m04035 hypothetical protein
          Length = 260

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -2

Query: 291 RFIYVDKLNPYLLKYSVLF*FQLNYIPNDSRSALLFNLLLDIKIAMTC 148
           RF Y  K   + L+       ++NY+P D        +LL+I  +  C
Sbjct: 209 RFTYDPKEKKFNLRKKGFVIGRINYVPRDIEDGYYLRILLNIVPSPRC 256


>At3g22415.1 68416.m02828 expressed protein
          Length = 67

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 90  TTNIYSVTISHYYYKGFIHNMSLL 161
           + N  S+++  ++++GFIH M +L
Sbjct: 19  SNNDKSISLLSFWFRGFIHRMFML 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,575,696
Number of Sequences: 28952
Number of extensions: 87341
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 281229760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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