BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= I09A02NGRL0001_J01 (298 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g62920.1 68414.m07104 expressed protein ; expression supporte... 26 5.2 At5g37110.1 68418.m04454 hypothetical protein 25 6.9 At1g26620.1 68414.m03242 expressed protein ; expression supporte... 25 6.9 At5g34540.1 68418.m04035 hypothetical protein 25 9.1 At3g22415.1 68416.m02828 expressed protein 25 9.1 >At1g62920.1 68414.m07104 expressed protein ; expression supported by MPSS Length = 260 Score = 25.8 bits (54), Expect = 5.2 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = -2 Query: 228 QLNYIPNDSRSALLFNLLLDIKIAMTC 148 QLN +P S+ +L+N + +K+ TC Sbjct: 107 QLNQVPCRSKQFILYNAIKVLKLDSTC 133 >At5g37110.1 68418.m04454 hypothetical protein Length = 1307 Score = 25.4 bits (53), Expect = 6.9 Identities = 12/48 (25%), Positives = 21/48 (43%) Frame = -2 Query: 291 RFIYVDKLNPYLLKYSVLF*FQLNYIPNDSRSALLFNLLLDIKIAMTC 148 RF Y K + L+ ++NY+P D +LL+++ C Sbjct: 712 RFTYDSKEKKFNLRKKGFAIGRINYVPRDIEDGYYLRILLNVQPGPRC 759 >At1g26620.1 68414.m03242 expressed protein ; expression supported by MPSS Length = 867 Score = 25.4 bits (53), Expect = 6.9 Identities = 8/20 (40%), Positives = 14/20 (70%) Frame = +1 Query: 154 HCYLNIQ**VKQECGSGIVW 213 H ++N+Q +QEC +G+ W Sbjct: 397 HSFVNLQGPKRQECSAGLPW 416 >At5g34540.1 68418.m04035 hypothetical protein Length = 260 Score = 25.0 bits (52), Expect = 9.1 Identities = 13/48 (27%), Positives = 21/48 (43%) Frame = -2 Query: 291 RFIYVDKLNPYLLKYSVLF*FQLNYIPNDSRSALLFNLLLDIKIAMTC 148 RF Y K + L+ ++NY+P D +LL+I + C Sbjct: 209 RFTYDPKEKKFNLRKKGFVIGRINYVPRDIEDGYYLRILLNIVPSPRC 256 >At3g22415.1 68416.m02828 expressed protein Length = 67 Score = 25.0 bits (52), Expect = 9.1 Identities = 8/24 (33%), Positives = 17/24 (70%) Frame = +3 Query: 90 TTNIYSVTISHYYYKGFIHNMSLL 161 + N S+++ ++++GFIH M +L Sbjct: 19 SNNDKSISLLSFWFRGFIHRMFML 42 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,575,696 Number of Sequences: 28952 Number of extensions: 87341 Number of successful extensions: 110 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 110 length of database: 12,070,560 effective HSP length: 70 effective length of database: 10,043,920 effective search space used: 281229760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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