Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I24
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp...    29   0.46 
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    25   7.5  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   7.5  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   10.0 

>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
           beta subunit Qcr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 457

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 132 PSLQVLSIGESVGPFPTFVGIKLNTGGRRPYKADIYFIVEGMS 260
           PS + LS+G   G  P FVG ++         A+I   VEGMS
Sbjct: 230 PSAEQLSLGAPRGLKPRFVGSEIRARDDDSPTANIAIAVEGMS 272


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
 Frame = +3

Query: 114 QEDAGAPSLQVLSIGESVGPFPTFVGIKLNTGGRRPYKADIYFIVEGMSSSILK------ 275
           Q   G PS Q+  I   VG  P  V      G + P+ + +  ++  ++  I++      
Sbjct: 318 QAHLGFPSNQIDGI---VGTSPVNVLTSPGIGAKAPFASLLEGVIPPINVLIVEDNIINQ 374

Query: 276 KILQYVWSFHNFQQEKLLAILKGIKSWKIKSPEKVHIDI 392
           KIL+      N   E     L+ ++ WK KS   + +DI
Sbjct: 375 KILETFMKKRNISSEVAKDGLEALEKWKKKSFHLILMDI 413


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 117 EDAGAPSLQVLSIGESVGPFPTFVGIKLNTGGRRPYKADIYFIVEGMSSSILKK 278
           ++ G  ++  +     +  F +F   +  +G    YK   YF+V+GM   +L++
Sbjct: 647 KELGLTNVDSMRSSVDIKQFFSFSSDRKASGAIFEYKDKYYFVVKGMPERVLQQ 700


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -1

Query: 364 FIFHDFIPF-NIASNFSCWKL*KLHTYCKIFFKILLDMPSTMKYMSA 227
           F++H  +   N  +N S  +  ++ T   +F   L ++PS  +Y+S+
Sbjct: 251 FLYHMLVSLHNQVTNTSHLEKQRISTVATLFISKLFEIPSLSEYLSS 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,745
Number of Sequences: 5004
Number of extensions: 50688
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)