Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_I24
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0880 + 25620487-25620852,25620950-25621041,25621316-256217... 31 0.82
04_04_0294 + 24204563-24204748,24205531-24205620,24205980-242062... 29 2.5
01_02_0091 - 11023912-11024017,11024112-11024185,11024478-110248... 29 2.5
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694... 27 7.7
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 27 7.7
02_05_0385 - 28506326-28506891,28506993-28507405,28507496-285077... 27 7.7
>06_03_0880 +
25620487-25620852,25620950-25621041,25621316-25621789,
25622079-25623039
Length = 630
Score = 30.7 bits (66), Expect = 0.82
Identities = 14/47 (29%), Positives = 31/47 (65%)
Frame = +3
Query: 324 LLAILKGIKSWKIKSPEKVHIDIIVKLQDKTVFATHMNQSRFDSLNG 464
+L +L GI+ W+ KSP++V+ ++V ++K +F ++ + + L+G
Sbjct: 245 ILEMLSGIQPWRGKSPDEVY-QLVVLKKEKPIFPYNLPPAIENVLSG 290
>04_04_0294 +
24204563-24204748,24205531-24205620,24205980-24206211,
24207180-24207457,24207576-24207647,24208054-24208295,
24208781-24209197,24209296-24209497,24209624-24209738,
24209821-24209906,24210235-24210354,24210431-24210519,
24210588-24210669,24211072-24211263,24211546-24211668
Length = 841
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = +3
Query: 237 YFIVEGMSSSILKKILQYVWSFHNFQQEKLLAILKGIKSWKIKSPEK 377
+ + E IL K L+ + N+Q++ +LA++ ++S++ +SP +
Sbjct: 91 FCVQENWPEDILSKALEDICLEKNYQEKCVLALVHSLQSYEDRSPHR 137
>01_02_0091 -
11023912-11024017,11024112-11024185,11024478-11024834,
11024938-11025166,11025468-11025559,11026099-11026326,
11027108-11027356,11027429-11027471,11027589-11027836,
11027922-11028035,11028122-11028322,11028417-11028593,
11028725-11028853,11029210-11029287,11029369-11029464,
11029563-11029634,11031549-11031677,11032105-11032220,
11033048-11033204,11033343-11033426,11033513-11033574,
11034901-11035067,11035162-11035226,11035315-11035371,
11035547-11035633,11036638-11036703,11036810-11036908
Length = 1193
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 48 VVSQVSNPDPNYLATNNYIVSGQEDAGAPSLQVLSIGESVG 170
VV NP P +++ Y+V G+ SLQ + + +++G
Sbjct: 644 VVFDTKNPMPVHISAKKYLVRGELHVEMGSLQEIDLSKNIG 684
>07_03_1781 +
29468919-29468951,29469057-29469184,29469349-29469433,
29469771-29469824,29470072-29470163,29470280-29470383,
29470811-29470886,29471231-29471678,29471874-29471916,
29471977-29472209,29472302-29472505,29472595-29472693,
29472789-29472861,29473373-29473500,29473614-29473836,
29473992-29474215,29474296-29474423,29475053-29475167,
29475603-29475658,29475795-29475888,29475966-29476152,
29476229-29476309,29476384-29476484,29476567-29476629,
29476800-29476907
Length = 1059
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 60 VSNPDPNYLATNNYIVSGQEDAGAPSLQVLSIGESVGPF 176
V DPN TN Y ++G+E P L+ + ++ PF
Sbjct: 406 VPTTDPNITVTNLYSLNGRESQSIP-LKKFVVKQNAAPF 443
>05_04_0284 -
19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 243 IVEGMSSSILKKI-LQYVWSFHNFQQEKLLAILKGIKSWKIKSPEKVHI 386
++ G S++ +++ L Y+ + L+ IL+ +KS K P +H+
Sbjct: 473 MISGSGSTLFEELGLYYIGPVDGHNIDDLITILREVKSTKTTGPVLIHV 521
>02_05_0385 - 28506326-28506891,28506993-28507405,28507496-28507743,
28507820-28508480,28508572-28509498,28509588-28509847,
28509943-28510143,28515547-28515633,28516200-28516375,
28516465-28516519,28516623-28516910
Length = 1293
Score = 27.5 bits (58), Expect = 7.7
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +3
Query: 225 KADIYFIVEGMSSSILKKILQYVWSFHNFQQEKLLAILKGIKSWKIKSPEKVHIDIIVKL 404
KA + GMS S +L + F++ K+L K I+ K+KS K HI ++
Sbjct: 1069 KAGKSMALVGMSGSGKSTVLSLILRFYDPIAGKVLIDGKDIRKVKLKSLRK-HIGLV--Q 1125
Query: 405 QDKTVFATHMNQSRFDSLNGQDLAYIED 488
Q+ +FAT + + +G A + D
Sbjct: 1126 QEPALFATTIYDNILYGKDGATEAEVVD 1153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,874,179
Number of Sequences: 37544
Number of extensions: 311874
Number of successful extensions: 757
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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