Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I24
         (559 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39)          29   1.9  
SB_49630| Best HMM Match : UBX (HMM E-Value=3.8)                       29   1.9  
SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   1.9  
SB_9813| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_6041| Best HMM Match : UBX (HMM E-Value=1)                          29   3.4  
SB_6965| Best HMM Match : EB (HMM E-Value=1.3)                         28   5.9  

>SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39)
          Length = 373

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = +3

Query: 201 NTGGRRPYKADIYFIVEGMSSSILKKILQYVWSFHNFQQEKLLAILKGIKSWKIKSPEKV 380
           N      +KA  +   E   + + KK+L+ +W F  F +E L  IL  +   K+ SPE++
Sbjct: 92  NPNENADFKAKFHPKSEEQRNHLKKKLLE-LWLFEKFHREDLDVILDSMFEKKV-SPEEI 149

Query: 381 HIDI 392
            I +
Sbjct: 150 IIKV 153


>SB_49630| Best HMM Match : UBX (HMM E-Value=3.8)
          Length = 215

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +3

Query: 270 LKKILQYVWSFHNFQQEKLLAILKGIKSWKIKSPEKVHIDIIVKLQDKTVFATHMNQSRF 449
           L+ + QY++S HN  QEK+  + +    + ++  +K    +      +TV  T +N S+ 
Sbjct: 60  LENVYQYIYSRHNINQEKVFTLSQEAFQYFVQEEQKFVDALNAIFACETVQETPINISKA 119

Query: 450 DSL 458
             L
Sbjct: 120 SKL 122


>SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 979

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = +3

Query: 270  LKKILQYVWSFHNFQQEKLLAILKGIKSWKIKSPEKVHIDIIVKLQDKTVFATHMNQSRF 449
            L+ + QY++S HN  QEK+  + +    + ++  +K    +      +TV  T +N S+ 
Sbjct: 862  LENVYQYIYSRHNINQEKVFTLSQEAFQYFVQEEQKFVDALNAIFACETVQETPINISKA 921

Query: 450  DSL 458
              L
Sbjct: 922  SKL 924


>SB_9813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 168

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +3

Query: 303 HNFQQEKLLAILKGIKSWKIK-SPEKVHIDIIVKLQDKTVFATHMNQSRFDSLNGQDL-- 473
           H   Q+ L  + +  + W++K +P+K ++  I   +DK+ F  H+  +  + +N Q    
Sbjct: 63  HQALQQDLHHLERWAEQWQMKFAPKKCYVMTITLKRDKSQFPYHLCGTTLEGVNVQKYLG 122

Query: 474 AYIEDFLRFGSHINQ 518
            +I   L +  H  +
Sbjct: 123 VHISTSLNWSKHTEE 137


>SB_6041| Best HMM Match : UBX (HMM E-Value=1)
          Length = 651

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +3

Query: 270 LKKILQYVWSFHNFQQEKLLAILKGIKSWKIKSPEKVHIDIIVKLQDKTVFATHMNQSRF 449
           L+ + QY++S HN  QEK+  + +    + ++  +K    +      +TV  T  N S+ 
Sbjct: 374 LENVYQYIYSRHNINQEKVFTLSQEAFQYFVQEEQKFVDALNAIFACETVQETPTNISKA 433

Query: 450 DSL 458
             L
Sbjct: 434 SKL 436


>SB_6965| Best HMM Match : EB (HMM E-Value=1.3)
          Length = 514

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +3

Query: 270 LKKILQYVWSFHNFQQEKLLAILKGIKSWKIKSPEK 377
           L+ + QY++S HN  QEK+  + +    + ++  +K
Sbjct: 466 LENVYQYIYSRHNINQEKVFTLSQEAFQYFVQEEQK 501


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,247,552
Number of Sequences: 59808
Number of extensions: 359673
Number of successful extensions: 729
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)