Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I24
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase...    30   1.2  
At5g54730.1 68418.m06815 expressed protein                             29   2.8  
At5g53670.1 68418.m06666 hypothetical protein similar to unknown...    29   2.8  
At2g20250.1 68415.m02366 hypothetical protein                          28   3.7  
At4g34820.1 68417.m04941 expressed protein                             27   8.5  

>At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase,
           putative / 1-deoxyxylulose-5-phosphate synthase,
           putative / DXP-synthase, putative (DEF) (CLA1) identical
           to SP|Q38854 Probable 1-deoxy-D-xylulose 5-phosphate
           synthase, chloroplast precursor (EC 4.1.3.37)
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS). [Mouse-ear cress] {Arabidopsis thaliana}, DEF
           (deficient in photosynthesis) protein [Arabidopsis
           thaliana] GI:1399261
          Length = 717

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 243 IVEGMSSSILKKI-LQYVWSFHNFQQEKLLAILKGIKSWKIKSPEKVHI 386
           ++ G  SS+ +++ L Y+        + L+AILK +KS +   P  +H+
Sbjct: 312 MISGTGSSLFEELGLYYIGPVDGHNIDDLVAILKEVKSTRTTGPVLIHV 360


>At5g54730.1 68418.m06815 expressed protein
          Length = 763

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
 Frame = +3

Query: 246 VEGMSSSILKKILQYVWS-FHNFQQEK-------LLAILKGIKSWKIKSPEKVHIDIIVK 401
           V   SS++     Q +W+ F N Q+E        LLA   G + W ++  E VH  +IV 
Sbjct: 47  VSAASSAVESHHDQVLWAGFDNLQKEDGDTRRVLLLAFKSGFQVWDVEDTENVH--VIVS 104

Query: 402 LQDKTVFATHM 434
             D   F   M
Sbjct: 105 AHDGQAFFMQM 115


>At5g53670.1 68418.m06666 hypothetical protein similar to unknown
           protein (pir |T17429)
          Length = 244

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 418 TVLSCSFTMISMCTFSGDFIFHDFIPFNIASNFSCWK 308
           T L+ SF++ S+  ++      D IP    SNFS WK
Sbjct: 14  TYLTLSFSLFSVLGYTSSLSNVDSIPMLSGSNFSEWK 50


>At2g20250.1 68415.m02366 hypothetical protein
          Length = 559

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -1

Query: 496 RRKSSMYAKSCPFRLSNLD*FM*VANTVLSCSFTMISMCTFSGDFIFHDFIPFNIAS 326
           R  S+     CPF++   D      +++ + +    S  T S  F  HD+IPF   S
Sbjct: 496 RNLSNSLVDHCPFKVPGCDIVSFPFSSISNSNLLEASSPTTSNRFKSHDWIPFQFQS 552


>At4g34820.1 68417.m04941 expressed protein 
          Length = 321

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 306 NFQQEKLLAILKGIKSWKIKSPEKVHIDIIVKLQDKTV 419
           N  +  LL I KG+K       +  HI++I+ +Q+K +
Sbjct: 194 NVAEVYLLTIFKGLKHRLAAGAKIPHINLIISIQEKEI 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,159,733
Number of Sequences: 28952
Number of extensions: 258846
Number of successful extensions: 652
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)