Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I23
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       29   0.67 
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    27   2.7  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   3.6  
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    26   4.7  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   6.2  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    25   6.2  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   6.2  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    25   8.3  

>SPAC1952.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 158

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 147 YKQQVLRLLHMLWYFPSENGMLDHR 221
           Y  +VLR  H  WY P ++ M+D R
Sbjct: 42  YTSKVLRCSHCGWYEPVDSAMIDQR 66


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 10  YIKMEGSHKLNSRNDHIHNGEGTATENRRAPPPPYVS 120
           YI M+G++ L ++ D +++  G  + N    P P +S
Sbjct: 170 YITMQGANSLKAQQDLLNSFTGAPSNNSHNIPDPNLS 206


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 37   LNSRNDHIHNGEGTATENRRAPPPPYVSVEAQP 135
            + S+N H  NG   A  N      P+V+V A P
Sbjct: 1084 VTSKNGHSRNGSHAAHSNNVIGTQPHVNVSAVP 1116


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -2

Query: 446 ALTYPCLFLCTPTTSNIVNIKCNARNIINIEQNITKVKPKLRFSVLLF 303
           A TYP     T  +     +   +  I N+  N  KVKP   +S LL+
Sbjct: 131 ATTYPLDIARTRLSIETAGLTSRSLAINNVANNSLKVKPLTLWSTLLY 178


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 7   VYIKMEG--SHKLNSRNDHIHNGEGTATENRRAPPPP 111
           V +K EG  +++ +  N +++NG   +  +  APPPP
Sbjct: 91  VAVKHEGISNNESSDENMNVNNGNLDSFSSSSAPPPP 127


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 400 LLVVGVHKNKHGYVKAYVIYASILFGMSVLATITNLIRIKYLSIIGFIFNLIQTCI 567
           L V+G         + Y IYA++LF +S +  I + + I  ++II   F  + + I
Sbjct: 159 LAVIGSPSYSPTKYEQYGIYAALLFVISAMTAIPSRV-IAKVNIINITFQFLVSII 213


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
            Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 382  HLIFTILLVVGVHKNKHGYVKAYVIYASILFGMSVLA 492
            HL+   + V  V  N+ G+V AYV+        SVLA
Sbjct: 988  HLVSEGVFVEKVEANRRGFVSAYVVPGRQTIINSVLA 1024


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 226 NNR*SSIPFSEGKYHSMCRSRNTCCL 149
           +NR S IPFS+ ++H      +  CL
Sbjct: 119 DNRESEIPFSDTRFHDEFDRESRACL 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,070
Number of Sequences: 5004
Number of extensions: 48908
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)