Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I23
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1475 - 27369088-27369199,27369404-27369651,27369734-273699...    31   0.91 
05_04_0399 - 20955319-20955838,20955939-20956201                       29   2.1  
11_06_0506 - 24380469-24380632,24381737-24383893,24384488-243845...    29   2.8  
07_01_0078 + 582592-582747,585226-585305,585384-585543                 29   2.8  
08_02_0456 - 17362080-17364156,17364853-17364942,17372615-173733...    29   3.7  
04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590...    27   8.5  

>08_02_1475 -
           27369088-27369199,27369404-27369651,27369734-27369900,
           27370386-27370621,27371340-27371620
          Length = 347

 Score = 30.7 bits (66), Expect = 0.91
 Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
 Frame = +1

Query: 379 LHLIFTIL--LVVGVH-KNKHGYVKAYVIYASILFGMSVLATITNLIRIKYLSI--IGFI 543
           +HLI  +L  L +G+  + + G+V+  +IY    FG SVL+ +   +R  Y+S+   G +
Sbjct: 150 IHLIVNMLSLLFIGLRLEQQFGFVRIGIIYLLSGFGGSVLSVL--FLRNNYISVGASGAL 207

Query: 544 FNLIQTCIS 570
           F L+ + +S
Sbjct: 208 FGLLGSMLS 216


>05_04_0399 - 20955319-20955838,20955939-20956201
          Length = 260

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +1

Query: 58  IHNGEGTATENRRAPPPPY-VSVEAQ 132
           +  G+G A  N+ APPPP+ +SV A+
Sbjct: 130 LSGGDGIAASNKAAPPPPHPISVPAK 155


>11_06_0506 - 24380469-24380632,24381737-24383893,24384488-24384541,
            24384543-24384597,24384914-24384916,24385192-24385231,
            24385576-24385632,24388124-24388412,24389764-24389771,
            24390633-24390688,24391207-24391488,24391651-24391811,
            24391887-24392121,24392860-24392943,24393022-24393117,
            24393333-24394055,24396523-24396987
          Length = 1642

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 388  IFTILLVVGVHKNK--HGYVKAYVIYASILFGMSVLATITNLIRIKYLS 528
            +F ILLV G H     +GY +A VI   +LF  +V+    +L+R  + S
Sbjct: 1161 LFNILLVWGNHHQHKLNGYSRADVIVTYVLFVGAVILETMSLLRAMFSS 1209


>07_01_0078 + 582592-582747,585226-585305,585384-585543
          Length = 131

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 385 LIFTILLVVGVHKNKHGYVKAYVIYASILFGMSVLATIT 501
           LI   +  +G H  KH ++ A V  +  LFG + +A +T
Sbjct: 80  LILERMKKIGTHNTKHAWMVAGVTISGYLFGAAFVALLT 118


>08_02_0456 -
           17362080-17364156,17364853-17364942,17372615-17373318,
           17373421-17373451,17374366-17374448,17374517-17374640,
           17376427-17376560
          Length = 1080

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 487 LATITNLIRIKYLSIIGFIFNLIQTCIS 570
           LA I NL+ +KYLSI   I N++ T I+
Sbjct: 735 LANIENLLHLKYLSIKDTIVNVLPTQIT 762


>04_04_1385 -
           33157557-33157655,33157752-33158201,33158864-33159004,
           33159058-33159329,33160371-33160821
          Length = 470

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
 Frame = +1

Query: 10  YIKMEGSHKLNSRNDHIHNGEGTATENRRAPPPPYVSVEAQPVNVVTSSKYY---DSYTC 180
           Y++ME + K +S    I        +    PP P  +  +          YY   DS TC
Sbjct: 332 YVRMERNIKASSGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTC 391

Query: 181 CGIFPLKTGCLIIGYYNLVSAVC 249
           C I+     C   G   L  A C
Sbjct: 392 CCIYEYGKYCYAWGCCPLEGATC 414


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,485,336
Number of Sequences: 37544
Number of extensions: 301520
Number of successful extensions: 970
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)