Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I23
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68470.1 68414.m07822 exostosin family protein contains Pfam ...    32   0.33 
At4g24670.2 68417.m03532 alliinase family protein contains Pfam ...    28   4.1  
At4g24670.1 68417.m03531 alliinase family protein contains Pfam ...    28   4.1  
At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putati...    28   5.4  
At1g04260.1 68414.m00417 prenylated rab acceptor (PRA1) family p...    28   5.4  
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER...    27   7.1  
At4g32530.1 68417.m04631 vacuolar ATP synthase, putative / V-ATP...    27   9.4  
At2g39050.1 68415.m04800 hydroxyproline-rich glycoprotein family...    27   9.4  
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG...    27   9.4  
At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C su...    27   9.4  
At2g18640.1 68415.m02171 geranylgeranyl pyrophosphate synthase, ...    27   9.4  

>At1g68470.1 68414.m07822 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 455

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +1

Query: 304 NNNTEKRNLGLTLVIFCSILMIFLALHLIFTILLVVGVHKNKHGYVKAYVIYASILFGMS 483
           N  T K  L LTL++ CSI  +FL L+  FTI     + +        YV      F + 
Sbjct: 27  NRETVKLTL-LTLLLLCSICFLFLTLNFPFTIEFTASIPRTCDHNFTVYVYDLPKEFNIG 85

Query: 484 VLATITNL 507
           +L    +L
Sbjct: 86  LLQNCRHL 93


>At4g24670.2 68417.m03532 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 440

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 124 EAQPVNVVTSSKYYDSYTCCGIFPLKTGCLIIGYY 228
           ++ P+NVV+++ YY +Y      PL T CL  G Y
Sbjct: 170 DSGPINVVSATPYYSTY------PLITDCLKSGLY 198


>At4g24670.1 68417.m03531 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 440

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 124 EAQPVNVVTSSKYYDSYTCCGIFPLKTGCLIIGYY 228
           ++ P+NVV+++ YY +Y      PL T CL  G Y
Sbjct: 170 DSGPINVVSATPYYSTY------PLITDCLKSGLY 198


>At1g78270.1 68414.m09121 UDP-glucose glucosyltransferase, putative
           similar to UDP-glucose glucosyltransferase GI:3928543
           from [Arabidopsis thaliana]
          Length = 489

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 76  FLLHCVYGRSLNSIYVSLPS*CTP 5
           FL HC +  +L S+Y  +P  C P
Sbjct: 377 FLTHCGWNSTLESLYAGVPMICWP 400


>At1g04260.1 68414.m00417 prenylated rab acceptor (PRA1) family
           protein weak similarity to prenylated Rab acceptor [Mus
           musculus] GI:7716652; contains Pfam profile PF03208:
           Prenylated rab acceptor (PRA1)
          Length = 182

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 328 LGLTLVIFCSILMIFLALHLIFTILLVVGVHK-NKHGYVKAYVIYASILFGMSVLATITN 504
           LGLTL+     ++ F+A+ L +  L           G+     I A +L G+S+ + +T 
Sbjct: 64  LGLTLITRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSIGSLVTT 123

Query: 505 LIRIKYLSIIGF 540
            + ++ L+ +GF
Sbjct: 124 GVWLRALTTVGF 135


>At4g05310.1 68417.m00809 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 415

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 58  IHNGEGTATENRRAPPPPYVSVE 126
           IHN +    +  ++PP P++SVE
Sbjct: 79  IHNNDDQIPQTEQSPPAPWISVE 101


>At4g32530.1 68417.m04631 vacuolar ATP synthase, putative /
           V-ATPase, putative SP|P23968 Vacuolar ATP synthase 22
           kDa proteolipid subunit (EC 3.6.3.14) {Saccharomyces
           cerevisiae}; contains Pfam profile PF00137: ATP synthase
           subunit C
          Length = 180

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 145 VTSSKYYDSYTCCGIFPLKTGCLIIGYYNLVSAVC 249
           V SSK YD+ +    + +    +I+G+ NLV  +C
Sbjct: 94  VPSSKMYDAESLRAGYAIFASGIIVGFANLVCGLC 128


>At2g39050.1 68415.m04800 hydroxyproline-rich glycoprotein family
           protein contains QXW lectin repeat domain, Pfam:PF00652
          Length = 317

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 55  HIHNGEGTATENRRA--PPPPYVSVEAQPVNVVTSSKYYDSY 174
           H H+      ++R++   PPP+V    QP  +  S  ++D Y
Sbjct: 8   HRHHQRDDGEDDRQSFGVPPPHVDAPPQPHGLYQSQPHFDPY 49


>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
           identical to P-glycoprotein GI:3849833 from [Arabidopsis
           thaliana]; homologous to mammalian mdr gene,contains
           ATP-binding cassette; related to multi drug resistance
           proteins
          Length = 1286

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +1

Query: 328 LGLTLVIFCSILMIFLALHLIFTILLVVGVHKNK-HGY-VKAYVIYASILFGMSVLATIT 501
           LG    + C  L  F A    + +  V+ V+ N  H Y +K    Y  +L G+S  A + 
Sbjct: 702 LGSVGSVICGSLSAFFA----YVLSAVLSVYYNPDHEYMIKQIDKYCYLLIGLSSAALVF 757

Query: 502 NLIRIKYLSIIG 537
           N ++  +  I+G
Sbjct: 758 NTLQHSFWDIVG 769


>At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C
           subunit family protein similar to SP|P23968 Vacuolar ATP
           synthase 22 kDa proteolipid subunit (EC 3.6.3.14)
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00137: ATP synthase subunit C
          Length = 178

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 145 VTSSKYYDSYTCCGIFPLKTGCLIIGYYNLVSAVC 249
           V SSK YD+ +    + +    +I+G+ NLV  +C
Sbjct: 92  VPSSKMYDAESLRAGYAIFASGIIVGFANLVCGLC 126


>At2g18640.1 68415.m02171 geranylgeranyl pyrophosphate synthase,
           putative / GGPP synthetase, putative /
           farnesyltranstransferase, putative similar to
           gi:1944371; contains GB:L22347
          Length = 372

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 346 IFCSILMIFLALHLIFTIL 402
           IF  +L++FL+LH +FT L
Sbjct: 6   IFLYLLIVFLSLHFVFTTL 24


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,494,746
Number of Sequences: 28952
Number of extensions: 246658
Number of successful extensions: 999
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 998
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)