Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_I22
(575 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g52550.1 68418.m06525 expressed protein 30 0.96
At2g02120.1 68415.m00148 plant defensin-fusion protein, putative... 29 1.7
At5g10080.1 68418.m01168 aspartyl protease family protein contai... 29 2.9
At5g50200.3 68418.m06216 expressed protein similar to unknown pr... 28 3.9
At5g50200.2 68418.m06218 expressed protein similar to unknown pr... 28 3.9
At5g50200.1 68418.m06217 expressed protein similar to unknown pr... 28 3.9
At5g06580.1 68418.m00743 FAD linked oxidase family protein simil... 27 6.8
At4g04920.1 68417.m00715 expressed protein 27 6.8
>At5g52550.1 68418.m06525 expressed protein
Length = 360
Score = 30.3 bits (65), Expect = 0.96
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -3
Query: 195 DSCSDGVRRWYCLNISSVPWDHVEARARRCSGGVSAGKRHHRCNCYYVSEHH 40
+ C D R PWD+ + SGG++ H RC+ Y V +++
Sbjct: 250 EDCDDSYRNTLNQETGFKPWDYT-TKINLFSGGINRFFPHQRCSSYAVHDNN 300
>At2g02120.1 68415.m00148 plant defensin-fusion protein, putative
(PDF2.1) plant defensin protein family member, personal
communication, Bart Thomma
(Bart.Thomma@agr.kuleuven.ac.be); contains a
gamma-thionin family signature (PDOC00725)
Length = 77
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = -2
Query: 313 SKCRRSCHPDELPGG-CRPFCLRVFC 239
+ C CH + PGG CR F R FC
Sbjct: 48 TNCENVCHNEGFPGGDCRGFRRRCFC 73
>At5g10080.1 68418.m01168 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 528
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 103 GAPPSACF-DMIPGHAADVQTVPAPYTITTAVSSVKAGHSIDVVISGKTP 249
G PS C D I A + +P + T + GH++ I+GKTP
Sbjct: 447 GWSPSKCQEDKIEPPQASPGSTSSPNPLPTDEQQSRGGHAVSPAIAGKTP 496
>At5g50200.3 68418.m06216 expressed protein similar to unknown
protein (pir||T05562) isoform contains a non-consensus
AT acceptor splice site at intron 1
Length = 210
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 379 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESA 519
HK+ AK D+ S WT +D+ F V++YAV +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152
>At5g50200.2 68418.m06218 expressed protein similar to unknown
protein (pir||T05562) isoform contains a non-consensus
AT acceptor splice site at intron 1
Length = 210
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 379 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESA 519
HK+ AK D+ S WT +D+ F V++YAV +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152
>At5g50200.1 68418.m06217 expressed protein similar to unknown
protein (pir||T05562) isoform contains a non-consensus
AT acceptor splice site at intron 1
Length = 210
Score = 28.3 bits (60), Expect = 3.9
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 379 HKMHAKELDRQTVSYPWTAPKDLEGDVVFKVTIVKSYAVFWVGIESA 519
HK+ AK D+ S WT +D+ F V++YAV +G E A
Sbjct: 110 HKIIAKPYDKTLQSTTWTLERDIPTGTYF----VRAYAVDAIGHEVA 152
>At5g06580.1 68418.m00743 FAD linked oxidase family protein similar
to SP|Q12627 from Kluyveromyces lactis and SP|P32891
from Saccharomyces cerevisiae; contains Pfam FAD linked
oxidases, C-terminal domain PF02913, Pfam FAD binding
domain PF01565
Length = 567
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 350 LRGCEKV-SSGLTVQVPTILSP*RASRRMPAILSSGVLPL 234
LR C ++ S+ + T+LSP + RR+P SS + PL
Sbjct: 17 LRPCRQLHSTPKSTGDVTVLSPVKGRRRLPTCWSSSLFPL 56
>At4g04920.1 68417.m00715 expressed protein
Length = 1250
Score = 27.5 bits (58), Expect = 6.8
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Frame = +1
Query: 199 SVKAGHSIDVVISGKTPEDKMAGILLEARQGDKIVGTWTVSPDDTFSQPLNCGEPNNAVT 378
++++ I VV+ K E + G + + VSP F L +PN+ +
Sbjct: 43 TIESTDPILVVVEEKLLEKSVDGEKEDDNSSSSNMEIDPVSPATVFCVKLK--QPNSNLL 100
Query: 379 HKMHAKELDRQTVSYPWTAPKD---LEGDVVFKVTIVKSYAVFWVGI 510
HKM EL R + W + + ++ K+ FW+ I
Sbjct: 101 HKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKANTPFWIPI 147
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,700,652
Number of Sequences: 28952
Number of extensions: 312348
Number of successful extensions: 775
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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