Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_I19
(445 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 29 0.42
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 28 0.56
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 27 1.7
SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.7
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 1.7
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 25 4.0
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 25 5.2
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 25 6.9
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 25 6.9
SPAC19A8.07c |||U3 snoRNP-associated protein Imp4 |Schizosacchar... 24 9.1
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 24 9.1
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 28.7 bits (61), Expect = 0.42
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +3
Query: 123 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVE 245
K L + + + YYK+ K Y +AN D K VE
Sbjct: 89 KTLGVSKSASASEIKSAYYKLAKQYHPDANPDKAAQDKFVE 129
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 0.56
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Frame = +3
Query: 108 VERQKKVLSLFQDVDQVNVDDE-YYKIGKD-YD--VEANIDNYTNKKAVEEFL 254
VER+K++ +L Q D + ++DE YY + D Y+ EA +TN++ V+E +
Sbjct: 225 VERRKQIYTLAQKHDIIILEDEPYYYLQMDAYEGKPEAADKAFTNEQFVKELI 277
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 26.6 bits (56), Expect = 1.7
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -2
Query: 276 DNRFCTISRILQQLSYWCSYRCW 208
D + T++++ + LS W YR W
Sbjct: 239 DRKILTVNQVFEILSLWLEYRDW 261
>SPAC6G9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 132
Score = 26.6 bits (56), Expect = 1.7
Identities = 16/72 (22%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +3
Query: 6 KTVLVLAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKV----LSLFQDVDQVNVDDE 173
K ++ A +I +++ + +H +D V + QK+ S D D+ V DE
Sbjct: 28 KLIMKFADMIKNARNNEDNEDNHHINYEDESDVGTDEQKQQEGVNSSAVSDTDESAVSDE 87
Query: 174 YYKIGKDYDVEA 209
+ +I +++ ++A
Sbjct: 88 FMQIKEEFPMKA 99
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.6 bits (56), Expect = 1.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 141 QDVDQVNVDDEYYKIGKDYDVEANIDN 221
Q+V Q+N +DEY + + D EA IDN
Sbjct: 55 QNVMQMNFEDEYSEFSNE-DDEAEIDN 80
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 4.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 108 VERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 257
+ R+KK+L+L + D + V+DE Y + D +++ K FLK
Sbjct: 224 LSRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSLNPAQQKCDGSTFLK 273
>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 204 EANIDNYTNKKAVEEFLKLYRIGYLPK 284
E + N+T ++A+EE KL LPK
Sbjct: 270 EERLTNFTEEEAIEECKKLNTKSMLPK 296
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 24.6 bits (51), Expect = 6.9
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Frame = +3
Query: 114 RQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEF-LKLYRIGYLPKYY 290
RQ+K LSL D+DQ + ++ + NY + V F L+ GY YY
Sbjct: 160 RQEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYY 219
Query: 291 -EFSIFYQKLREEAIALFHLFYYAKDFETFYKSAA 392
+F + ++ L+ L Y + + K A
Sbjct: 220 IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVA 254
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 24.6 bits (51), Expect = 6.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 108 VERQKKVLSLFQDVDQVNVDDEYY 179
+ER+KK L+L + D + V+DE Y
Sbjct: 221 LERRKKFLTLAKKYDIIIVEDEPY 244
>SPAC19A8.07c |||U3 snoRNP-associated protein Imp4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 289
Score = 24.2 bits (50), Expect = 9.1
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +3
Query: 141 QDVDQVNVDDEYYKIGK 191
Q+ + N+DDEY+++G+
Sbjct: 65 QEETETNLDDEYHRLGE 81
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 24.2 bits (50), Expect = 9.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -3
Query: 443 NIICVQELSLI*VHTSESGTLVEGFKVFSIVEQVEKSNS 327
++ICVQEL + + +VEGF + ++ K S
Sbjct: 36 DVICVQELKMQKDSFPQQYAVVEGFDSYFTFPKIRKGYS 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,206
Number of Sequences: 5004
Number of extensions: 33051
Number of successful extensions: 117
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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