Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I19
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly...    29   1.4  
At5g40200.1 68418.m04878 DegP protease, putative contains simila...    29   1.9  
At4g22320.1 68417.m03227 expressed protein                             28   3.3  
At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to...    28   3.3  
At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase fa...    28   3.3  
At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative (CH...    27   4.3  
At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative (CH...    27   4.3  
At5g27230.1 68418.m03248 expressed protein  ; expression support...    27   5.7  
At5g34900.1 68418.m04114 Ulp1 protease family protein contains P...    27   7.5  
At5g07940.1 68418.m00920 expressed protein                             27   7.5  
At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase, put...    27   7.5  
At5g24450.1 68418.m02882 transcription factor-related low simila...    26   10.0 
At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related si...    26   10.0 
At1g79670.2 68414.m09292 wall-associated kinase, putative simila...    26   10.0 
At1g79670.1 68414.m09291 wall-associated kinase, putative simila...    26   10.0 
At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase fa...    26   10.0 

>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly
           identical to GI:9957293; contains Pfam profile: PF01397
           terpene synthase family
          Length = 591

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
 Frame = +3

Query: 111 ERQKKVLSLFQD--VDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRIGYLPK 284
           E+ +K+L+  Q   +DQ+   D+  K+G  Y  EA IDN       ++   +        
Sbjct: 82  EKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNILTSSYKKDRTNIQESDLHAT 141

Query: 285 YYEFSIFYQKLREEAIALFHLFYYAKDFETFYKSAAFARVHLNEGQFL 428
             EF +F Q     +  +F +F   ++   F +   +  + L E  +L
Sbjct: 142 ALEFRLFRQHGFNVSEDVFDVF--MENCGKFDRDDIYGLISLYEASYL 187


>At5g40200.1 68418.m04878 DegP protease, putative contains
           similarity to DegP2 protease GI:13172275 from
           [Arabidopsis thaliana]
          Length = 592

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 159 NVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLKLYRI 269
           N +DEY K   DYD    +D  T K+A  + L  + I
Sbjct: 542 NCEDEYMKFNLDYDQIVVLDTKTAKEATLDILTTHCI 578


>At4g22320.1 68417.m03227 expressed protein 
          Length = 238

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 87  KDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEE 248
           K V    +E QKK ++  ++ D++  DD   KI +D  VE   D     K VEE
Sbjct: 115 KYVPIAVLEEQKKEITEIEEDDKIEEDD---KIDEDNKVEQE-DKVDEDKTVEE 164


>At4g01440.1 68417.m00185 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 365

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +3

Query: 36  ALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIG 188
           ++V S VV    Y F    V  +  E +KK+   F + DQ   DDE YK G
Sbjct: 306 SVVGSGVVIFGLYIFLLGKVRLMKEECEKKLPCRFNEDDQEEDDDEQYKKG 356


>At1g72700.1 68414.m08407 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|Q9Y2Q0, SP|O43520]; contains InterPro
           accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1228

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = -3

Query: 398 SESGTLVEG-FKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQ 252
           S SG ++E  +KV +++E   K   +   +  E+G++++L K  DS+ F+
Sbjct: 595 SGSGQIIEREYKVLNLLEFTSKRKRMTVIVRDEEGQILLLCKGADSIIFE 644


>At5g41610.2 68418.m05055 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 742

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 293 LIVLGKITDSVQFQEFFNSFLIGVVI 216
           ++V G ITD++     F +F++GV+I
Sbjct: 204 VLVCGFITDAIGIHSMFGAFVVGVLI 229


>At5g41610.1 68418.m05056 cation/hydrogen exchanger, putative
           (CHX18) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 810

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 293 LIVLGKITDSVQFQEFFNSFLIGVVI 216
           ++V G ITD++     F +F++GV+I
Sbjct: 272 VLVCGFITDAIGIHSMFGAFVVGVLI 297


>At5g27230.1 68418.m03248 expressed protein  ; expression supported
           by MPSS
          Length = 948

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +3

Query: 93  VDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNYTNKKAVEEFLK 257
           V A+ +E+++K L L  +  +     E+ K  KD+D+E   +    K+ VE+  K
Sbjct: 69  VKALELEKKEKELCLIDESMKAK-QSEFEKKEKDFDLEQKAEVEKRKREVEQLEK 122


>At5g34900.1 68418.m04114 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At1g32840, At4g04010,
           At2g06430, At2g15140, At2g04980, At2g14130, At3g44500,
           At2g15190, At3g47260, At3g29210, At2g02210, At3g32900
          Length = 767

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +3

Query: 123 KVLSLFQDVDQVNVDDEYYKIGKDYDVEANI-DNYTNKKAVEEFLKLYRIGYLPKYYEFS 299
           K+++L  DV ++ V+     IG   D ++ + D +TN    ++ L+L ++GY  K  E++
Sbjct: 287 KIVNLVNDVYEIEVNTI---IGNPEDFKSLVPDFHTNDTEFQQVLELVKMGYRLKKTEWN 343


>At5g07940.1 68418.m00920 expressed protein
          Length = 1526

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 68  NVSLQDKRCRRSVCGAPEKGFIPFP 142
           N+S QDK C+    G  EK F+  P
Sbjct: 393 NISAQDKFCQMEDSGPAEKSFMKVP 417


>At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase,
           putative / 3-PGDH, putative similar to phosphoglycerate
           dehydrogenase, Arabidopsis thaliana, SP:O04130
          Length = 603

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 359 SIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQEFFNSFLIGVVID 213
           +I  Q+    S F   L E GE+ V GK+ D V       SF + V ++
Sbjct: 480 TITVQLSNVESKFASSLSESGEVKVEGKVKDGVPHLTKVGSFEVDVTLE 528


>At5g24450.1 68418.m02882 transcription factor-related low
           similarity to transcription factor IIIC63 [Homo sapiens]
           GI:5281316
          Length = 545

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +3

Query: 60  SPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEYYKIGKDYDVEANIDNY 224
           S + +   TKD+       ++K   +  D D  ++DDEY +   D D+  +   Y
Sbjct: 434 SQRNHQETTKDMKKCKNTNKEKDDDVNADEDSEDLDDEYEEAANDDDISISSHGY 488


>At3g15355.1 68416.m01945 ubiquitin-conjugating enzyme-related
           similar to ubiquitin-conjugating enzyme (GI:3319990)
           [Mus musculus]; similar to Baculoviral IAP
           repeat-containing protein 6 (Ubiquitin-conjugating
           BIR-domain enzyme apollon) (Swiss-Prot:Q9NR09) [Homo
           sapiens];
          Length = 609

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 132 SLFQDVDQVNVDDEYYKIGKDYDVEANIDNYT 227
           SL      +  DDE Y    D+++EA  DNY+
Sbjct: 94  SLLDPESLIYEDDENYSEQYDFEMEAEPDNYS 125


>At1g79670.2 68414.m09292 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 714

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 21  LAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEY 176
           +AG +A + S+  +P  YH   K  + +  E+ +  +S F     +NVD  +
Sbjct: 490 IAGALAYLHSAASTP-VYHRDVKTTNILLDEKYRAKVSDFGTSRSINVDQTH 540


>At1g79670.1 68414.m09291 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 751

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +3

Query: 21  LAGLIALVQSSVVSPKTYHFKTKDVDAVFVERQKKVLSLFQDVDQVNVDDEY 176
           +AG +A + S+  +P  YH   K  + +  E+ +  +S F     +NVD  +
Sbjct: 527 IAGALAYLHSAASTP-VYHRDVKTTNILLDEKYRAKVSDFGTSRSINVDQTH 577


>At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|O43520], Mus musculus [SP|P70704]; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1218

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 398 SESGTLVEG-FKVFSIVEQVEKSNSLFP*LLVEDGELIVLGKITDSVQFQ 252
           S SG  +E  +KV ++++   K   +   +  E+G++++L K  DS+ F+
Sbjct: 584 SHSGQTIEREYKVLNLLDFTSKRKRMSVVVRDEEGQILLLCKGADSIIFE 633


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,041,228
Number of Sequences: 28952
Number of extensions: 170541
Number of successful extensions: 479
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)