Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I18
         (263 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439...    27   2.1  
09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724...    27   2.1  
01_07_0224 - 42121011-42122486                                         26   4.8  
02_05_1039 + 33707196-33708815                                         25   6.3  
01_06_1365 - 36690267-36692222                                         25   6.3  
03_05_0927 - 28874819-28877098,28877689-28877691                       25   8.3  

>11_01_0558 -
           4396750-4396986,4397699-4398050,4398266-4398504,
           4398608-4398709
          Length = 309

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
 Frame = +3

Query: 96  EPVY--YIQHYE---EPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGND 239
           EP Y   + HY     PEL+   R   DA G + L  D   G    +P  G D
Sbjct: 157 EPFYGTKVSHYPPCPRPELVDGLRAHTDAGGLILLFQDDRFGGLQMIPNRGGD 209


>09_02_0322 -
           7240125-7241568,7242043-7243253,7245782-7246144,
           7246502-7246522
          Length = 1012

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 238 SLPAKGTLTPAPEVPSELSVRAP 170
           S+P + +L PAP   S+L V AP
Sbjct: 870 SIPVQNSLPPAPPSASQLQVHAP 892


>01_07_0224 - 42121011-42122486
          Length = 491

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 24  FGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEP 131
           F +  F+L V LCV + +   IV  P Y +  + +P
Sbjct: 24  FVQFFFVLSVVLCVLLYAPRFIVLTPTYGLDFFPQP 59


>02_05_1039 + 33707196-33708815
          Length = 539

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 205 PEVPSELSVRAPCASLRTLELVNSSGSS*C 116
           P + + L   APC    TLE V+  G   C
Sbjct: 285 PHLRNLLRFEAPCVLTNTLEFVDKDGKEQC 314


>01_06_1365 - 36690267-36692222
          Length = 651

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 221 YFNSSTRGTIGVERESSVRVPA 156
           Y +SSTR    +ER SSVR P+
Sbjct: 403 YLDSSTRRRRSLERSSSVRRPS 424


>03_05_0927 - 28874819-28877098,28877689-28877691
          Length = 760

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 90  VSEPVYYIQHYEEPELLTSSRVRRDAHGALTLNS 191
           V   V+YIQ   E  +L  S V R+   A TLNS
Sbjct: 252 VPNKVHYIQSNSEVVVLAKSSVLRENSIAPTLNS 285


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,593,103
Number of Sequences: 37544
Number of extensions: 109291
Number of successful extensions: 393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)