Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I18
         (263 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13644-7|AAM48536.2|  700|Caenorhabditis elegans Hypothetical pr...    27   1.4  
U13644-6|AAB52678.1|  739|Caenorhabditis elegans Hypothetical pr...    27   1.4  
AC024805-3|AAK39338.1|  801|Caenorhabditis elegans Hypothetical ...    27   1.8  
Z83111-4|CAB05535.2|  498|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AC024205-2|AAF36046.1|  308|Caenorhabditis elegans Hypothetical ...    25   5.6  
AL132847-2|CAB63372.1|  343|Caenorhabditis elegans Hypothetical ...    25   7.4  
U08022-1|AAA17722.1|  515|Caenorhabditis elegans STE12 transcrip...    25   9.8  

>U13644-7|AAM48536.2|  700|Caenorhabditis elegans Hypothetical
           protein F56D2.6b protein.
          Length = 700

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 106 TIFNTMRSLNY*QALESAGTRTELSRSTPMVPLVLELKYPLLVTTRI 246
           T+   +  LNY QA+   G  TEL       PL  +L   L+ +T +
Sbjct: 479 TLMRALELLNYLQAINDDGELTELGSLMAEFPLDPQLAKMLITSTEL 525


>U13644-6|AAB52678.1|  739|Caenorhabditis elegans Hypothetical
           protein F56D2.6a protein.
          Length = 739

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 106 TIFNTMRSLNY*QALESAGTRTELSRSTPMVPLVLELKYPLLVTTRI 246
           T+   +  LNY QA+   G  TEL       PL  +L   L+ +T +
Sbjct: 479 TLMRALELLNYLQAINDDGELTELGSLMAEFPLDPQLAKMLITSTEL 525


>AC024805-3|AAK39338.1|  801|Caenorhabditis elegans Hypothetical
           protein Y51H7C.6a protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 78  RYLIVSEPVYYIQHYEEPELLTSSRVRRDAHGAL 179
           R L+ +EP+ +  +Y+   LLTSS + R    +L
Sbjct: 671 RLLVENEPLLFADNYQTLLLLTSSEIARQIEQSL 704


>Z83111-4|CAB05535.2|  498|Caenorhabditis elegans Hypothetical
           protein F57G8.5 protein.
          Length = 498

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 6   FQYTNMFGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEPE 134
           F ++ +  KIV L +  +C+G+  R L+V    ++  H+   E
Sbjct: 351 FDFSTLSWKIVLLCISVICIGLIVRALLVMLTTHF-SHFNVKE 392


>AC024205-2|AAF36046.1|  308|Caenorhabditis elegans Hypothetical
           protein Y73C8B.3 protein.
          Length = 308

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 108 YIQHYEEPELLTSSRVRRDAHGALTLNSDG 197
           YI H    E    + V RDAHG + +N  G
Sbjct: 110 YIGHSRGCENALQTAVARDAHGIVLINPTG 139


>AL132847-2|CAB63372.1|  343|Caenorhabditis elegans Hypothetical
           protein Y48G10A.3 protein.
          Length = 343

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +3

Query: 87  IVSEPVYYIQHYEEPELLTSSRVRRDAHGALTLNSDGTSGAGVKVP 224
           IV +   + QH   P  L            L ++ DGT+G  +KVP
Sbjct: 207 IVRQYRVFFQHLPNPNSLAEFIESYIQRTPLPISRDGTTGVQLKVP 252


>U08022-1|AAA17722.1|  515|Caenorhabditis elegans STE12
           transcriptional activator protein.
          Length = 515

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 142 QALESAGTRTELSRSTPMVPLVL 210
           +ALE+AG+ T  +   P+ PL++
Sbjct: 493 EALEAAGSETAATTQKPLKPLIV 515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,681,538
Number of Sequences: 27780
Number of extensions: 94228
Number of successful extensions: 252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)