Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_I18
(263 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM... 29 0.42
At3g12350.1 68416.m01540 F-box family protein ; similar to SKP1... 27 2.3
At4g27290.1 68417.m03916 S-locus protein kinase, putative simila... 26 3.0
At5g09730.1 68418.m01127 glycosyl hydrolase family 3 protein bet... 25 5.2
At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger) fa... 25 6.9
At1g28010.1 68414.m03430 multidrug resistance P-glycoprotein, pu... 25 6.9
At1g27940.1 68414.m03423 multidrug resistance P-glycoprotein, pu... 25 6.9
At4g28470.1 68417.m04073 26S proteasome regulatory subunit, puta... 25 9.1
At1g17160.1 68414.m02092 pfkB-type carbohydrate kinase family pr... 25 9.1
>At1g13980.1 68414.m01647 pattern formation protein (EMB30) (GNOM)
identical to SP|Q42510; contains Pfam profile PF01369:
Sec7 domain
Length = 1451
Score = 29.1 bits (62), Expect = 0.42
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 66 GVQSRYLIVSEPVYYIQHYEEPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGNDKN 245
GV S Y IVS+PV E ++ S + A GA +L DG G G + P + D +
Sbjct: 249 GVDSDYAIVSKPVEDGNANSEYDVENS--MATFATGAQSLMDDGPVGPGSRKPASPYDLH 306
Query: 246 IVS 254
I++
Sbjct: 307 IMT 309
>At3g12350.1 68416.m01540 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 422
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = -3
Query: 165 RPCGL*SLSIVQAPHSVEYSKQVR*QSGIGFERRRTERQAIKRRSSRT 22
R G S ++ +P+ E Q+ ++ G +RRR +R+ +R++SRT
Sbjct: 204 RSSGDESDDLISSPNFSEMYTQLANKTSPGGDRRRQKRKEKERQASRT 251
>At4g27290.1 68417.m03916 S-locus protein kinase, putative similar
to S-receptor kinase gi|392557|gb|AAA62232; contains
Pfam domains PF00954: S-locus glycoprotein family,
PF00069: Protein kinase domain and PF01453: Lectin
(probable mannose binding)
Length = 772
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 81 YLIVSEPVYYIQHYEEPELLTSSRVRRDAHGAL 179
Y+ E VYY E P +LT R++ + +GAL
Sbjct: 227 YVFTEEEVYYTYKLENPSVLT--RMQLNPNGAL 257
>At5g09730.1 68418.m01127 glycosyl hydrolase family 3 protein
beta-xylosidase, Hypocrea jecorina, EMBL:Z69257
Length = 773
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +3
Query: 123 EEPELLTSSRVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVS 254
++ EL+T RV A G + L SG G + FA NDK I S
Sbjct: 514 KQQELVT--RVAMAARGPVVLVI--MSGGGFDITFAKNDKKITS 553
>At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 691
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 90 QSGIGFERRRTERQAIKRRSSRTCLCTE 7
Q+ ++RRRTER + RRS + L +
Sbjct: 436 QNSPHYQRRRTERSELARRSLLSSLAAD 463
>At1g28010.1 68414.m03430 multidrug resistance P-glycoprotein,
putative similar to mdr-like P-glycoprotein GI:3849833
from [Arabidopsis thaliana]
Length = 1247
Score = 25.0 bits (52), Expect = 6.9
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3
Query: 87 IVSEPVYYIQHYEEP---ELLTSSRVRRDAHGALTLNSDG 197
IV+ P+Y +QHY E LT SRVR A+ N G
Sbjct: 735 IVTAPIYILQHYFYTLMGERLT-SRVRLSLFSAILSNEIG 773
>At1g27940.1 68414.m03423 multidrug resistance P-glycoprotein,
putative similar to mdr-like P-glycoprotein atpgp1
GI:3849833 from [Arabidopsis thaliana]
Length = 1245
Score = 25.0 bits (52), Expect = 6.9
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3
Query: 87 IVSEPVYYIQHYEEP---ELLTSSRVRRDAHGALTLNSDG 197
IV+ P+Y +QHY E LT SRVR A+ N G
Sbjct: 733 IVTAPIYLLQHYFYTLMGERLT-SRVRLSLFSAILSNEIG 771
>At4g28470.1 68417.m04073 26S proteasome regulatory subunit, putative
contains Pfam domain PF01851: Proteasome/cyclosome repeat
Length = 1103
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 148 LESAGTRTELSRSTPMVPLVLELKYP 225
L +AG R EL+ +VPL+ L YP
Sbjct: 958 LLAAGERAELATEKYVVPLIPLLHYP 983
>At1g17160.1 68414.m02092 pfkB-type carbohydrate kinase family
protein contains Pfam profile: PF00294 pfkB family
carbohydrate kinase
Length = 379
Score = 24.6 bits (51), Expect = 9.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 150 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKN 245
R+ DAHG L + G G GV + + + N
Sbjct: 127 RLGEDAHGKLIAEALGDDGCGVHLDYVRSVNN 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,271,109
Number of Sequences: 28952
Number of extensions: 84392
Number of successful extensions: 263
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,070,560
effective HSP length: 66
effective length of database: 10,159,728
effective search space used: 213354288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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