Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I17
         (262 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351     31   0.17 
08_02_0665 + 19818500-19819013,19819169-19819260,19819435-198200...    29   0.51 
04_01_0363 + 4754650-4755912                                           29   0.51 
05_05_0142 - 22673607-22674134                                         29   0.68 
01_06_1258 + 35806557-35806932,35807517-35807679,35807789-358078...    26   4.8  
12_02_0698 - 22236588-22236830,22237175-22237189                       25   6.3  
03_05_1151 - 30763140-30763240,30764074-30764618,30764651-30764817     25   6.3  
05_05_0315 - 24030695-24030787,24030896-24030995,24031120-240312...    25   8.4  

>09_04_0156 - 15190502-15190903,15191149-15191154,15191512-15192351
          Length = 415

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 40  GERGWPGIEGLKGEQGENGEFGLDG 114
           G+   PG +G  G++GE G+F +DG
Sbjct: 195 GKGATPGGQGCTGQKGEEGDFAIDG 219


>08_02_0665 +
           19818500-19819013,19819169-19819260,19819435-19820056,
           19820575-19820775,19821327-19821395,19821428-19821522,
           19821608-19822153
          Length = 712

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 34  QRGERGWPGIEGL-KGEQGENGEFGLDGFTGP 126
           +RGER W GI G  KG + + G   ++G  GP
Sbjct: 33  RRGERRWHGIRGAEKGVKEDGGGEAVEGSGGP 64


>04_01_0363 + 4754650-4755912
          Length = 420

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 4   EPGIAISPKGQRGERGWPGIEGLKGEQGENG 96
           E G   S   +RG R WPG  G+ G++G +G
Sbjct: 259 ERGWRRSLNRERGGRTWPGEAGIAGQRGGSG 289


>05_05_0142 - 22673607-22674134
          Length = 175

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +1

Query: 1   GEPGIAISPKGQRGERGWPGIEGLKGEQGENGEFGLDGFTGPVG 132
           GE G+  S  G+ G  G  G EG++G+ GE GE G  GF G  G
Sbjct: 124 GEEGVEGS--GEGGGEGGGGEEGVEGD-GEGGEGG--GFDGGEG 162


>01_06_1258 +
           35806557-35806932,35807517-35807679,35807789-35807837,
           35807943-35808866,35808954-35809049,35809142-35809257,
           35809345-35809447,35809570-35809658,35809750-35809900,
           35809995-35810141,35810238-35810366,35810451-35810529,
           35810616-35810725
          Length = 843

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/45 (26%), Positives = 18/45 (40%)
 Frame = +1

Query: 1   GEPGIAISPKGQRGERGWPGIEGLKGEQGENGEFGLDGFTGPVGL 135
           G  G+    K   G+ GW  +E    E   NG    + F   +G+
Sbjct: 83  GLRGLRFLDKTSGGKEGWKSVERRFDEMNRNGRLPKESFGKCIGM 127


>12_02_0698 - 22236588-22236830,22237175-22237189
          Length = 85

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 19 ISPKGQRGERGWPGIEGLKGEQGE 90
          +S  G+ G+  WP + GL+ E+ +
Sbjct: 18 MSSGGEEGKTSWPEVVGLRAEEAK 41


>03_05_1151 - 30763140-30763240,30764074-30764618,30764651-30764817
          Length = 270

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = +1

Query: 34  QRGERGWPGIEGLKGE---QGENGEFGLDGFT 120
           QR    W G EG+ GE   QG  G   LD FT
Sbjct: 38  QRRRFLWAGTEGITGENVSQGGLGVLNLDKFT 69


>05_05_0315 -
           24030695-24030787,24030896-24030995,24031120-24031247,
           24031350-24031517,24031626-24031741,24031773-24031896,
           24032085-24032254,24032255-24032999
          Length = 547

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 257 SPGRISDGSRPSP*SPFIPLGP 192
           SP  IS  + P+P  P  P+GP
Sbjct: 34  SPATISPSAAPAPAKPPAPIGP 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.148    0.459 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,553,151
Number of Sequences: 37544
Number of extensions: 51182
Number of successful extensions: 82
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 14,793,348
effective HSP length: 65
effective length of database: 12,352,988
effective search space used: 259412748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)