Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I16
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1343 - 26274788-26275019,26275972-26276611,26277174-262783...    31   0.59 
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472...    28   5.5  
07_03_1172 - 24521582-24521714,24522028-24522200,24522459-245226...    27   9.6  
05_04_0451 - 21365617-21366279                                         27   9.6  

>08_02_1343 -
           26274788-26275019,26275972-26276611,26277174-26278367,
           26278515-26278701
          Length = 750

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +1

Query: 172 RTNHRYRIVGFVD----NTYTGYRPNYRRTYTPNQNDGDECEISDIDEICTHV 318
           R N RYR+VGFV+    + Y G+   Y R   P Q +G        D   T V
Sbjct: 678 RDNSRYRLVGFVEHLGPSMYAGHYVAYVRPSPPQQTNGSSSWFRASDTDITEV 730


>08_02_0246 + 14745367-14745372,14745452-14746106,14746299-14747269,
            14748123-14749168,14750669-14751473
          Length = 1160

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +1

Query: 181  HRYRIVGFVDNTYTGYRPNYRRTYTPNQNDGDECEISDIDEICTHVCGNACTESC*AS 354
            HR +++  V N    +    ++  TP  N  +E  + +I EIC +      +E   AS
Sbjct: 902  HRVQLLLQVLNVKRFHHQQQQQQQTPQNNGQEELTVPEISEICDYFSRRVASEPYDAS 959


>07_03_1172 -
           24521582-24521714,24522028-24522200,24522459-24522677,
           24523878-24524114,24524332-24524469
          Length = 299

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 38  TANNNRVKMSLPRPVVILGQLWLLIAIGQ--SAAMPTEDATMVV 163
           T    RVK+  PR  ++LGQ + LI + +  +      DAT ++
Sbjct: 97  TVRVTRVKLLKPRDALLLGQAYRLITVDEYKNTTEAAVDATRII 140


>05_04_0451 - 21365617-21366279
          Length = 220

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 138 GIAAD*PMAINSHNWPSITTGLGSDILTLLLFAVNKMIAGIAL 10
           G+A   P+A N    P   + L ++ + LL   V  ++A +AL
Sbjct: 30  GVAGALPVAENGRGGPLAVSSLNTNTIVLLALLVCGLVAAVAL 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,583,931
Number of Sequences: 37544
Number of extensions: 265306
Number of successful extensions: 577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)