Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I16
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.     29   2.1  
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF039046-14|AAB94214.1|  388|Caenorhabditis elegans Prion-like-(...    28   4.9  
Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical p...    27   8.6  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z78059-5|CAJ80820.2| 1099|Caenorhabditis elegans Hypothetical
           protein C34B4.1b protein.
          Length = 1099

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +3

Query: 144 RMQLWLSQNTNKPQIQNCRIRRQHLHRISTQLQ 242
           R++LW+++   + + QN R+R Q+L R +TQLQ
Sbjct: 23  RIRLWVTKRMKELEDQNERLRAQNL-RCTTQLQ 54


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 256 PNQNDGDECEISDIDEICTHVCGNACTESC*ASSGS 363
           P  N+ ++C+   I    T +C  +C   C +S G+
Sbjct: 100 PQTNNCNQCQQQCISSCATPICAQSCNNQCSSSCGN 135


>AY084080-1|AAM08090.1| 1099|Caenorhabditis elegans MAX-1A protein.
          Length = 1099

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/33 (42%), Positives = 24/33 (72%)
 Frame = +3

Query: 144 RMQLWLSQNTNKPQIQNCRIRRQHLHRISTQLQ 242
           R++LW+++   + + QN R+R Q+L R +TQLQ
Sbjct: 23  RIRLWVTKRMKELEDQNERLRAQNL-RCTTQLQ 54


>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
            protein Y53C10A.9 protein.
          Length = 1564

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 397  ECGFRQ*HPEVGFLSSLSRIPYMRYHRRVCISHRYH 290
            E GFR  +P +GFL+ L +I  + Y +     H  H
Sbjct: 1133 EYGFRIFNPSIGFLAGLMKIAALNYPKSGLDKHFEH 1168


>AF039046-14|AAB94214.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 54
           protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/79 (20%), Positives = 26/79 (32%)
 Frame = +1

Query: 148 CNYGCHKIRTNHRYRIVGFVDNTYTGYRPNYRRTYTPNQNDGDECEISDIDEICTHVCGN 327
           CN  C+   +N   +        Y        + Y P  N+      ++    C   C N
Sbjct: 214 CNSACNSQCSNICQQTAQATQQVYNQNSNTNTQMYNPYNNNNQGSGSANCAPACQPACDN 273

Query: 328 ACTESC*ASSGSPLQGVTA 384
           +CT    A   +P    T+
Sbjct: 274 SCTSQTPAPMYNPYDASTS 292


>Z98877-11|CAB63408.1|  887|Caenorhabditis elegans Hypothetical
           protein Y69H2.11 protein.
          Length = 887

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 271 GDECEISDIDEICTHVCGNACTE 339
           GD+C+ SDI    T + G  CTE
Sbjct: 330 GDKCQYSDICTSATCLYGGTCTE 352


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 277 ECEISDIDEICTHVCGNACTESC*ASSGS 363
           +C  ++I+  C+  C  AC  SC  S+G+
Sbjct: 65  QCPRAEINSDCSATCVRACIPSCSKSTGN 93


>AF106581-5|AAC78210.1|  588|Caenorhabditis elegans Hypothetical
           protein VC5.2 protein.
          Length = 588

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 16/51 (31%), Positives = 18/51 (35%)
 Frame = +1

Query: 259 NQNDGDECEISDIDEICTHVCGNACTESC*ASSGSPLQGVTA*NRIHIRFC 411
           N   GD CE+ DI        G  CT+ C           T  NRI    C
Sbjct: 506 NNTTGDHCELCDIGFYGDPTMGRGCTK-CPCPKNGECSYNTVTNRIECNDC 555


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,633,918
Number of Sequences: 27780
Number of extensions: 236714
Number of successful extensions: 594
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)