Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I16
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   4.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.6  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   8.1  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 111 INSHNWPSITTGLGSDILTL 52
           ++SH+   I TG G  I+T+
Sbjct: 76  VSSHSSNGIHTGFGGSIITI 95


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 409 KTGYECGFRQ*HPEVGF 359
           +T YECG R   P + F
Sbjct: 650 ETNYECGLRFEDPMISF 666


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +1

Query: 187 YRIVGFVDNTYTGYRPNYRRTYTPN 261
           ++I+  + N Y     NY++ Y  N
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNN 103


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +1

Query: 187 YRIVGFVDNTYTGYRPNYRRTYTPN 261
           ++I+  + N Y     NY++ Y  N
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNN 103


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = +1

Query: 187 YRIVGFVDNTYTGYRPNYRRTYTPN 261
           ++I+  + N Y     NY++ Y  N
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNN 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,354
Number of Sequences: 438
Number of extensions: 2883
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)