Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_I13
(614 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.2
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 27 1.6
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 27 2.8
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 27 2.8
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 3.8
SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S... 26 3.8
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 26 5.0
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 6.6
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 8.7
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.9 bits (59), Expect = 1.2
Identities = 37/166 (22%), Positives = 67/166 (40%), Gaps = 13/166 (7%)
Frame = +3
Query: 117 DCVVACPPERTCKNRDIKFSC-IHDQKC-------QIKCVCKEGFIRNNNGICVREN-EC 269
DC C ++C + +K +C + C + +C+C + + N C REN C
Sbjct: 641 DCPYLCVLPKSCHHPQVKHNCHPTSEPCPPCPYFVKKRCLCGKHILENQP--CYRENVRC 698
Query: 270 DRVEPRHKRNFDDPIECTGKNEFYMCGP--ACDNVCSELHEQNRTHCPILNIMCNRKCYC 443
+ + + C +C P C++ C + + R +C +C C+
Sbjct: 699 GEL-------CNKLLSCKTHFCEKLCHPDGECESSCKKECGKRRMYC---EHVCQSPCHA 748
Query: 444 YDGYARDENNVC-IPVE-QCKNPAIKQKRHVKEVSCTGPNEEHYAS 575
G+ DE C P+E C+ I+ K+ + S P+ +H S
Sbjct: 749 --GHPCDERIPCKAPLEVSCECGRIR-KKVTCDASYDNPDPQHKVS 791
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 328 LPVHSIGSSKLRLCRGSTLSHSFSRTHMPLLF 233
LPV +GSS + L G LSHS S +H +++
Sbjct: 71 LPVTHVGSSFVEL--GQALSHSSSNSHTYIMY 100
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 312 IECTGKNEFYMCGPACDNVCSELHE 386
IECT ++ +CGP+C N + HE
Sbjct: 156 IECTDEDN--VCGPSCQNQRFQRHE 178
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -1
Query: 341 VKLIFTGTFYWIIKIALVPRLNSVTFILANTYAIIVSNKTFFANTFYLTFLVMNATEFYI 162
V L+F T ++ IA NS+ IL+ Y I + K + + +Y N + +
Sbjct: 1280 VHLLFLLTIFYPCPIAYTYVRNSIFLILSICYTINICVKVYGLSFYYFFHSFWNMFDVVV 1339
Query: 161 TI 156
T+
Sbjct: 1340 TL 1341
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 386 FMQFRADIITGGAAHVKLIFTGTFYWIIKIAL 291
F++F IT + H +IFT ++KIAL
Sbjct: 708 FIEFLFHNITVSSKHTAVIFTSDLLMVLKIAL 739
>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
Spo6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 291 KRNFDDPIEC-TGKNEFYMCGPA-CDNVCSELHEQNRTHCPILNIMCNRK 434
KR+ +P+ T ++ +C A C CS+ + Q +TH P N + K
Sbjct: 31 KRDIQNPLSYKTETSDKELCQTAACATSCSDWYPQQQTHMPHQNAFDSAK 80
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 342 MCGPACDNVCSELHEQNRTHCPILNIMCNRKCYCYDGY 455
+CG AC N + ++ HC N N KC + GY
Sbjct: 72 ICG-ACKNSLTVEEYRSTVHCKYCNHPFNPKCKNHAGY 108
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 6.6
Identities = 9/36 (25%), Positives = 23/36 (63%)
Frame = -2
Query: 181 MQLNFISRFLQVLSGGQATTQSDFSLVPLHFNSCVL 74
++++ +SR +++L GG+ +++ +L+PL L
Sbjct: 172 LEIDQLSRLVEILEGGEISSEILDTLLPLEIEDLAL 207
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 317 FYWIIKIALV-PRLNSVTFILANTYAIIVSNKTFFA 213
F W + + L+ + ++ F + +TY I NKTF A
Sbjct: 100 FCWTVLLPLIFKHVWNLNFKIGDTYTIHARNKTFTA 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,078
Number of Sequences: 5004
Number of extensions: 59896
Number of successful extensions: 160
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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