Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0001_I13
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0317 + 33097257-33097336,33098500-33098926,33100007-331000... 29 2.2
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762... 29 2.9
07_01_0616 + 4560866-4560952,4561144-4561208,4564481-4564913,456... 29 3.9
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771... 28 5.1
11_01_0788 + 6599962-6602700 28 6.8
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548... 28 6.8
02_01_0552 + 4074001-4074341,4075118-4075257,4075647-4075838,407... 28 6.8
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 28 6.8
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 27 8.9
09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268... 27 8.9
>03_06_0317 +
33097257-33097336,33098500-33098926,33100007-33100078,
33100490-33100600,33100973-33101173,33102157-33102222
Length = 318
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 102 TNEKSDCVVACPPERTCKNRDIKFSCIHDQKCQ 200
T+E+SD VV CPP+ +R+ S + CQ
Sbjct: 38 TDEESDGVVICPPDGNNDDREEAISSNNHDNCQ 70
>08_02_1159 +
24773328-24773994,24775430-24775558,24776080-24776220,
24777393-24777487,24777545-24778606
Length = 697
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 432 KCYCYDGYARDE--NNVCIPVEQCKNPAI 512
+CYC DGY + + C +++CK+P I
Sbjct: 204 RCYCSDGYEGNPYVDGGCRDIDECKSPHI 232
>07_01_0616 +
4560866-4560952,4561144-4561208,4564481-4564913,
4565634-4565786,4565875-4565946,4567602-4567712,
4568344-4568584,4568743-4568821,4568892-4569018
Length = 455
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 102 TNEKSDCVVACPPERTCKNRDIKFSCIHDQ 191
T+++SDCVV CPP + ++ S HD+
Sbjct: 62 TDDESDCVVICPPNGKAGHTEV-MSGRHDE 90
>06_01_0993 +
7710016-7710977,7711081-7711316,7711422-7711501,
7711977-7712072,7712995-7713892,7713983-7714093,
7714657-7714751
Length = 825
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 471 NVCIPVEQCKNPAIKQKRHVKEVSCTGPNEEHYASKKTCPPELC 602
++C+P P ++ R + +V T E HY+S T P +C
Sbjct: 669 HLCLPRSMA--PHLRVLRKISKVHSTNMPEAHYSSAATMVPVIC 710
>11_01_0788 + 6599962-6602700
Length = 912
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 421 CATENAIVTMDTPEMRITCAYPSNSVKIQPLNKNATLKRF 540
C T I+T ++ T AYP++ +K++PL N F
Sbjct: 305 CQTSRIIITTRQDDVA-TLAYPTHRLKLKPLEHNDAFDLF 343
>06_03_1508 -
30653967-30654245,30654342-30654631,30654773-30654841,
30654854-30654921,30655016-30655492,30655578-30655874,
30655974-30656824,30656917-30656990,30657270-30657292,
30657709-30657772,30658098-30658370,30658511-30658587,
30658686-30658912
Length = 1022
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Frame = +3
Query: 138 PERT--CKNRDIKFSCIHDQKCQIKC----VCKEGFIRNNNGICVRENECDRVEPRHK 293
P RT C+ F C H C I C C E + GIC + + + HK
Sbjct: 169 PSRTLDCRGCCAGFFCPHGLTCMIPCPLGAYCPESTLNKTTGICDPKGSTSQTKCFHK 226
>02_01_0552 +
4074001-4074341,4075118-4075257,4075647-4075838,
4077211-4077518
Length = 326
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Frame = -3
Query: 393 CSVHAIQSRHYHRRGRTCKTH--FYRYILLDHQNCACAAAQLCH 268
C V + + YHR+ R C+ H F R ++ + C H
Sbjct: 73 CGVELVGVKDYHRKHRVCEAHSKFPRVVVAGQERRFCQQCSRFH 116
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 283 GSTLSHSFSRTHMPLLFLIKPSLQTH 206
G+ LSHSFSR L+F + SL H
Sbjct: 198 GAELSHSFSRNESTLIFGSQHSLDPH 223
>12_01_1080 +
11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = +3
Query: 483 PVEQCKNPAIKQKRHVKEVSCTGPNEEHYASKKTCPPELC 602
P + C N Q+ + + P ++H PPELC
Sbjct: 442 PSKDCTNKFASQEMEANTPTSSVPQKDHSKLSSWLPPELC 481
>09_02_0533 -
10325681-10326211,10326260-10326328,10326758-10326855,
10326968-10327117,10327848-10327976,10328063-10328999
Length = 637
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Frame = +3
Query: 372 SELHEQNRTHCPILNIMCNR-----KCYCYDGYARDE--NNVCIPVEQCKNP 506
SE ++ C N C+ KC+C DGY + C +++CK+P
Sbjct: 269 SECTYESAPDCLSANSFCHAYDLGYKCHCSDGYQGNPYIRGGCHDIDECKSP 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,348,702
Number of Sequences: 37544
Number of extensions: 387449
Number of successful extensions: 926
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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