Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I13
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    37   1e-04
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    37   1e-04
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    26   0.34 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    26   0.34 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.78 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.78 
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.6  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +3

Query: 90  KCNGTNEKSDCVVACPPERTCKNRDIKFSCIHDQKCQIKCVCKEGFIRNNNGICVRENEC 269
           KC      S C   C  +R C N   K  CI  + C   CVC+ G++RN   +CV  ++C
Sbjct: 36  KCPSNEIFSRCDGRC--QRFCPNVVPKPLCI--KICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +3

Query: 315 ECTGKNEFYMCGPACDNVCSELHEQNRTHCPILNIMCNRKCYCYDGYARDENNVCIPVEQ 494
           +C     F  C   C   C  +  +     P+   +C   C C  GY R++  VC+P  +
Sbjct: 36  KCPSNEIFSRCDGRCQRFCPNVVPK-----PLCIKICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 495 C 497
           C
Sbjct: 91  C 91


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 21/60 (35%), Positives = 29/60 (48%)
 Frame = +3

Query: 90  KCNGTNEKSDCVVACPPERTCKNRDIKFSCIHDQKCQIKCVCKEGFIRNNNGICVRENEC 269
           KC      S C   C  +R C N   K  CI  + C   CVC+ G++RN   +CV  ++C
Sbjct: 36  KCPSNEIFSRCDGRC--QRFCPNVVPKPLCI--KICAPGCVCRLGYLRNKKKVCVPRSKC 91



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +3

Query: 315 ECTGKNEFYMCGPACDNVCSELHEQNRTHCPILNIMCNRKCYCYDGYARDENNVCIPVEQ 494
           +C     F  C   C   C  +  +     P+   +C   C C  GY R++  VC+P  +
Sbjct: 36  KCPSNEIFSRCDGRCQRFCPNVVPK-----PLCIKICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 495 C 497
           C
Sbjct: 91  C 91


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 281 LNSVTFILANTYAIIVSNKTFFANTFYLTFLVMN 180
           LN +T ILAN+ AII+  +   A    +  L+ N
Sbjct: 16  LNRITHILANSPAIIILGQDSKAKAIVVNTLISN 49


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 281 LNSVTFILANTYAIIVSNKTFFANTFYLTFLVMN 180
           LN +T ILAN+ AII+  +   A    +  L+ N
Sbjct: 54  LNRITHILANSPAIIILGQDSKAKAIVVNTLISN 87


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 472 TCAYPSNSVKIQPLNKNATLKRFHVLAQTRNITHPRKL 585
           TC YP +    +   ++ T KRFH  A ++    P  L
Sbjct: 387 TCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSL 424


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.78
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 472 TCAYPSNSVKIQPLNKNATLKRFHVLAQTRNITHPRKL 585
           TC YP +    +   ++ T KRFH  A ++    P  L
Sbjct: 387 TCYYPYHPSTQEDSEEHLTPKRFHSRAASKEDLSPSSL 424


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 265 NVTELSRGTSAILMIQ*NVPVKMSFTCAAPPVIMSALNCMNRT 393
           N   +  G +AI+M+Q   P+ +      PP+   A+  M +T
Sbjct: 390 NPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQT 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,450
Number of Sequences: 438
Number of extensions: 4610
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)