Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I12
         (456 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0300 - 16488358-16488447,16488684-16489116,16489377-164896...    29   2.3  
10_02_0136 + 5719136-5719780,5719923-5720237                           27   5.4  
06_03_0846 - 25328224-25330613,25330716-25330794                       27   5.4  

>09_04_0300 -
           16488358-16488447,16488684-16489116,16489377-16489642,
           16490015-16490044,16490282-16490606,16491752-16492035,
           16492154-16492376,16493117-16493173,16494454-16494947
          Length = 733

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 54  RFQCVDLFCCWLVGVVIS 1
           R+ CVD  CCWLVG V S
Sbjct: 63  RWSCVDS-CCWLVGCVCS 79


>10_02_0136 + 5719136-5719780,5719923-5720237
          Length = 319

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 201 AVNIFEPFGPPSDYVIKFSTRAISGH 124
           AV+I EPFG    YV  ++ R + GH
Sbjct: 152 AVDIPEPFGRRPAYVSNWAMRCVDGH 177


>06_03_0846 - 25328224-25330613,25330716-25330794
          Length = 822

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 160 IIRRWPEWLENVDSYKE 210
           II+RW  W   VD++KE
Sbjct: 640 IIQRWMRWFSEVDNFKE 656


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,338,992
Number of Sequences: 37544
Number of extensions: 179846
Number of successful extensions: 323
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)