Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I12
         (456 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9527| Best HMM Match : MFS_1 (HMM E-Value=0.022)                    27   5.6  

>SB_9527| Best HMM Match : MFS_1 (HMM E-Value=0.022)
          Length = 631

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +1

Query: 49  KSLLRCGVNNGHLDSDYNVVGHRQLMATDSPGRKLYNIIRRWPEWLENVDSYKE*YGYYS 228
           K++   G    H     + V   ++++T S         R W +WL + D YKE   Y+ 
Sbjct: 192 KAVAGVGALGAHGQPSGSQVSPAEILSTQSVADT--RTCRSWRQWLNDPDFYKEAIAYFP 249

Query: 229 I 231
           +
Sbjct: 250 L 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,315,971
Number of Sequences: 59808
Number of extensions: 220504
Number of successful extensions: 343
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)