Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I12
         (456 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear recep...    27   6.5  

>Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical
           protein C06C6.4 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 46  LKSLLRCGVNNGHLDSDYNVVGHRQ 120
           ++ LL C ++N H+  DY ++ H Q
Sbjct: 337 IEELLACELHNVHIHEDYRLILHEQ 361


>AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-63 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 46  LKSLLRCGVNNGHLDSDYNVVGHRQ 120
           ++ LL C ++N H+  DY ++ H Q
Sbjct: 339 IEELLACELHNVHIHEDYRLILHEQ 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,404,600
Number of Sequences: 27780
Number of extensions: 176960
Number of successful extensions: 293
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 293
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)