Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_I09
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo...   185   4e-48
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    27   1.3  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    27   2.2  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    27   2.2  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   3.0  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   5.2  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    25   6.8  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   9.0  

>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score =  185 bits (450), Expect = 4e-48
 Identities = 76/132 (57%), Positives = 101/132 (76%)
 Frame = +3

Query: 123 ENLLNGANYMDEHFTTAPFERNAPVILALLGVWYHNFYGAETHALLPYDQYLHRYAAYFQ 302
           E  L+GA+ MDE+F + P E+N P + AL+ +WY +F+GA+TH + PYDQYLHR+ AY Q
Sbjct: 299 EAFLSGAHAMDEYFCSTPLEKNIPALAALISIWYSDFFGAQTHLVAPYDQYLHRFPAYLQ 358

Query: 303 QGDMESNGKYVTRAGDEVPYSTGPIVWGEPGTNGQHAFYQLIHPGTRLIPCDFIARAQTH 482
           Q  MESNGK +TR+GD V Y+TG I+WGEPGTN QH+F+QLIH GT+LIP DF+   ++H
Sbjct: 359 QLSMESNGKAITRSGDMVNYTTGKILWGEPGTNSQHSFFQLIHQGTKLIPADFLIPIESH 418

Query: 483 NPISGGEHPRIL 518
           NPI   +H R+L
Sbjct: 419 NPIDNNKHHRML 430


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +3

Query: 291 AYFQQGD---MESNGKYVTRAGDEVPYSTGPIVW--GEPGTNGQHAFYQLIH 431
           A+   GD   M  NG+ +   G+EVPY+  P +W  G P  N  + F   I+
Sbjct: 572 AFVLMGDGIPMMYNGQELAMRGEEVPYNR-PAIWEKGFPKRNPYYKFTSTIN 622


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 191 SSYFSSPWGVVSQFLWR*NSCSV 259
           + Y  +PWG V +FLW   S S+
Sbjct: 243 AGYEETPWGCVERFLWYSTSYSL 265


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 252 ALLPYDQYLHRYAAYFQQGDMESNGKYVTRAGDEVPYSTGPIV 380
           A++ Y +  H + A F+   +  +G+Y+ R GD V  S   ++
Sbjct: 16  AVVEYLETKHGFNAIFRLPQLNEDGEYIYRTGDLVLGSVDDLI 58


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 275 ILVIW*QSMSFSAIKIVIPHPKES 204
           +L  W +S+  S + +VIP+PKE+
Sbjct: 586 VLSSWLKSLFLSLLDLVIPNPKEN 609


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +3

Query: 207 LLGVWYHNFYGAETHAL-LPYDQYL 278
           LL  WY  FY + TH   + Y Q+L
Sbjct: 689 LLPTWYTAFYNSHTHGFPILYPQFL 713


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1088

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 135  NGANYMDEHFTTAPFERNAPVILALLGVWY 224
            NGA  + EHF  AP +   P +  ++ ++Y
Sbjct: 1018 NGAKKIIEHFIAAPKKELLPDVKQMVRIYY 1047


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 379 TMGPVEYGTSSPALVTY 329
           TM P+EYG ++PA   Y
Sbjct: 672 TMSPIEYGQAAPAAHYY 688


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,962,614
Number of Sequences: 5004
Number of extensions: 41133
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)